View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20614_low_8 (Length: 322)
Name: NF20614_low_8
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_low_8 |
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| [»] scaffold1128 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 21708055 - 21707762
Alignment:
| Q |
20 |
tgttaaatttgtgttctttcatgattgtatgtttgagttatcgtgataacagtgttttatcggtttgctttttgagtatttttgttctcagtaattttgt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
21708055 |
tgttaaatttgtgttctttcatgattgtatgtttgagttatcgtgataacaatgttttattggtttgctttttaagtatttttgttctcagtaattttgt |
21707956 |
T |
|
| Q |
120 |
ttaacactattaacgaatcaggaaattttcagtttagttatcccaaatccttaagaatttatgtgttgagaaatttggtttatcaatgtgatgttatgaa |
219 |
Q |
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||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
21707955 |
ttaacactattaaagaatcagggaattttcaatttagttatcctaaatccttaagaatttatgttctgagaaatttggtttatcgatgtgatgttatgaa |
21707856 |
T |
|
| Q |
220 |
ttgcaaacaa-ttttaagtatgattactactattgcctgtaacttttatttttatattcgggatgcctatttttcttattcttatgtacctttg |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21707855 |
ttgcaaacaacttttaagtatgattactactattgcctgtaaattttatttttatattcgggatgcctatttttcttattcttatgtacctttg |
21707762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 21712598 - 21712305
Alignment:
| Q |
20 |
tgttaaatttgtgttctttcatgattgtatgtttgagttatcgtgataacagtgttttatcggtttgctttttgagtatttttgttctcagtaattttgt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
21712598 |
tgttaaatttgtgttctttcatgattgtatgtttgagttatcgtgataacaatgttttattggtttgctttttaagtatttttgttctcagtaattttgt |
21712499 |
T |
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| Q |
120 |
ttaacactattaacgaatcaggaaattttcagtttagttatcccaaatccttaagaatttatgtgttgagaaatttggtttatcaatgtgatgttatgaa |
219 |
Q |
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||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
21712498 |
ttaacactattaaagaatcagggaattttcaatttagttatcctaaatccttaagaatttatgttctgagaaatttggtttatcgatgtgatgttatgaa |
21712399 |
T |
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| Q |
220 |
ttgcaaacaa-ttttaagtatgattactactattgcctgtaacttttatttttatattcgggatgcctatttttcttattcttatgtacctttg |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21712398 |
ttgcaaacaacttttaagtatgattactactattgcctgtaaattttatttttatattcgggatgcctatttttcttattcttatgtacctttg |
21712305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 11946321 - 11946030
Alignment:
| Q |
20 |
tgttaaatttgtgttctttcatgattgtatgtttgagttatcgtgataacagtgttttatcggtttgctttttgagtatttttgttctcagtaattttgt |
119 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
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| T |
11946321 |
tgttaaatttgtgttctttcatgattgtatggttgagttatcgtgataaccgtgttttattggtttgctttt-gagtatttttgttctcagtaattctgt |
11946223 |
T |
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| Q |
120 |
ttaacactattaacgaatcaggaaattttcagtttagttatcccaaatccttaagaatttatgtgttgagaaatttggtttatcaatgtgatgttatgaa |
219 |
Q |
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|||||| |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11946222 |
ttaacagtattaaagaatcaggaa-ttttcaatttagttatcccaaatccttaagaatttatgtgttgagaaatttggtttatcgatgtgatgttatgaa |
11946124 |
T |
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| Q |
220 |
ttgcaaacaa-ttttaagtatgattactactattgcctgtaacttttatttttatattcgggatgcctatttttcttattcttatgtacctttg |
312 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11946123 |
ttgcaaacaacttttaagtatgattactactattacctgtaacctttattttcatattcgggatgcctatttttcttattcttatgtacctttg |
11946030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1128 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold1128
Description:
Target: scaffold1128; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 378 - 87
Alignment:
| Q |
20 |
tgttaaatttgtgttctttcatgattgtatgtttgagttatcgtgataacagtgttttatcggtttgctttttgagtatttttgttctcagtaattttgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
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| T |
378 |
tgttaaatttgtgttctttcatgattgtatggttgagttatcgtgataaccgtgttttattggtttgctttt-gagtatttttgttctcagtaattctgt |
280 |
T |
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| Q |
120 |
ttaacactattaacgaatcaggaaattttcagtttagttatcccaaatccttaagaatttatgtgttgagaaatttggtttatcaatgtgatgttatgaa |
219 |
Q |
| |
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|||||| |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
279 |
ttaacagtattaaagaatcaggaa-ttttcaatttagttatcccaaatccttaagaatttatgtgttgagaaatttggtttatcgatgtgatgttatgaa |
181 |
T |
|
| Q |
220 |
ttgcaaacaa-ttttaagtatgattactactattgcctgtaacttttatttttatattcgggatgcctatttttcttattcttatgtacctttg |
312 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
180 |
ttgcaaacaacttttaagtatgattactactattacctgtaacctttattttcatattcgggatgcctatttttcttattcttatgtacctttg |
87 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 19879617 - 19879759
Alignment:
| Q |
89 |
ttttgagtatttttgttctcagtaattttgttt-aacactattaacgaatcaggaaattttcagtttagttatcccaaatccttaagaatttatgtgttg |
187 |
Q |
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||||||||||||||| |||| |||||||| || ||| || |||| ||| ||| ||||||||||| || ||||||||| ||| ||||| |||||| | |
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| T |
19879617 |
ttttgagtatttttgctctcgttaattttgcttgaaccctgttaaacaattaggggattttcagtttgtttctcccaaatctttatgaattcatgtgtcg |
19879716 |
T |
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| Q |
188 |
agaaatttgg-tttatcaatgtgatgttatgaattgcaaacaa |
229 |
Q |
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|| ||||||| |||||| |||||||||||| ||||||||||| |
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| T |
19879717 |
agcaatttggttttatcgatgtgatgttatatattgcaaacaa |
19879759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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