View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20615_high_1 (Length: 468)
Name: NF20615_high_1
Description: NF20615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20615_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 109 - 458
Target Start/End: Complemental strand, 4659637 - 4659291
Alignment:
| Q |
109 |
catagactttgtcaagtctttttctccccgtggtatcccactattgcatgttatttattatacactaggtgacttctagcaagtcttcatctattatgtg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4659637 |
catagactttgtcaagtctttttctccccgtggtatcccactattgcatgttatttat---acactaggtgacttctagcaagtcttcatctattatgtg |
4659541 |
T |
|
| Q |
209 |
gattaaaaatggctggttnnnnnnnttaaatttagtcctatattcgtaggacctaattatatattttttctataaatacatcaacttttatattttcttc |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4659540 |
gattaaaaatggctggttaaaaaaattaaatttagtcctatattcgtaggacctaattatatattttttctataaatacatcaacttttatattttcttc |
4659441 |
T |
|
| Q |
309 |
ttccgtgcagaaaagaattaaaaatcttatctacatatgttttctcttataaattatagttctcgattttcaaccatagactctctaatttaacaaaaat |
408 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4659440 |
ttccgtacagaaaagaattaaaaatcttatctacatatgttttctcttataaattatagttctcgattttcaaccatagactctctgatttaacaaaaat |
4659341 |
T |
|
| Q |
409 |
ctgtgtgacaactgccatcatgtccgttttttatattcattgggcctatg |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4659340 |
ttgtgtgacaactgccatcatgtccgttttttatattcattgggcctatg |
4659291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 4632875 - 4632832
Alignment:
| Q |
120 |
tcaagtctttttctccccgtggtatcccactattgcatgttatt |
163 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
4632875 |
tcaagtcttcgtctcctcgtggtatcccactattgcatgttatt |
4632832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University