View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20615_high_5 (Length: 267)

Name: NF20615_high_5
Description: NF20615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20615_high_5
NF20615_high_5
[»] chr3 (6 HSPs)
chr3 (33-267)||(24754409-24754643)
chr3 (33-267)||(24763406-24763640)
chr3 (193-267)||(24994904-24994977)
chr3 (220-267)||(24758048-24758095)
chr3 (220-267)||(24767045-24767092)
chr3 (131-173)||(24994844-24994886)
[»] scaffold0726 (2 HSPs)
scaffold0726 (193-267)||(6482-6557)
scaffold0726 (131-173)||(6575-6617)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 33 - 267
Target Start/End: Complemental strand, 24754643 - 24754409
Alignment:
Q  33 acccatcctaaccacccaccagccaccacttcctcttctctctcacccctcactcttggatctgtggatttgtgttcgggtaatannnnnnnnnnnnncg 132  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||              ||    
T  24754643 acccattctaaccacccaccagccaccacttcctcttctctctcacccctcactcttggatctgtggatttgtgttcgggt-atttttttttctttttcg 24754545  T
Q  133 ctcttctattctattatattcttaatctgcagatctaaaga-nnnnnnnnnnnnnnncgctattgttttcgctcttagatttaaaaattagattgttgtt 231  Q
    |||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||| ||    
T  24754544 ctcttctattctattatattcttaatctgcagatctaaagatttttttttcttttttcgctattgttttcgctcttagatttaaaaattagattgttttt 24754445  T
Q  232 taatcctcttcctctgttattttattttcttgattt 267  Q
    ||||||||||||||||||||||||||||||||||||    
T  24754444 taatcctcttcctctgttattttattttcttgattt 24754409  T

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Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 33 - 267
Target Start/End: Complemental strand, 24763640 - 24763406
Alignment:
Q  33 acccatcctaaccacccaccagccaccacttcctcttctctctcacccctcactcttggatctgtggatttgtgttcgggtaatannnnnnnnnnnnncg 132  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||              ||    
T  24763640 acccattctaaccacccaccagccaccacttcctcttctctctcacccctcactcttggatctgtggatttgtgttcgggt-atttttttttctttttcg 24763542  T
Q  133 ctcttctattctattatattcttaatctgcagatctaaaga-nnnnnnnnnnnnnnncgctattgttttcgctcttagatttaaaaattagattgttgtt 231  Q
    |||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||| ||    
T  24763541 ctcttctattctattatattcttaatctgcagatctaaagatttttttttcttttttcgctattgttttcgctcttagatttaaaaattagattgttttt 24763442  T
Q  232 taatcctcttcctctgttattttattttcttgattt 267  Q
    ||||||||||||||||||||||||||||||||||||    
T  24763441 taatcctcttcctctgttattttattttcttgattt 24763406  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 24994904 - 24994977
Alignment:
Q  193 attgttttcgctcttagatttaaaaattagattgttgtttaatcctcttcctctgttattttattttcttgattt 267  Q
    |||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||    
T  24994904 attgtttttgctcttagatttaaaaatcagattttt-tttaatcctcttcctctgttattttattttcttgattt 24994977  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 24758095 - 24758048
Alignment:
Q  220 tagattgttgtttaatcctcttcctctgttattttattttcttgattt 267  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24758095 tagattgttttttaatcctcttcctctgttattttattttcttgattt 24758048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 24767092 - 24767045
Alignment:
Q  220 tagattgttgtttaatcctcttcctctgttattttattttcttgattt 267  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24767092 tagattgttttttaatcctcttcctctgttattttattttcttgattt 24767045  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 24994844 - 24994886
Alignment:
Q  131 cgctcttctattctattatattcttaatctgcagatctaaaga 173  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  24994844 cgctcttctattctattattttcttaatctgcagatctaaaga 24994886  T

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Target: scaffold0726 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 6557 - 6482
Alignment:
Q  193 attgttttcgctcttagatttaaaaattagattgttgttt-aatcctcttcctctgttattttattttcttgattt 267  Q
    |||||||| |||||||||||||||||| ||||| || ||| |||||||||||||| ||||||||| ||||||||||    
T  6557 attgtttttgctcttagatttaaaaatcagattttttttttaatcctcttcctctattattttatgttcttgattt 6482  T

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Target: scaffold0726; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 6617 - 6575
Alignment:
Q  131 cgctcttctattctattatattcttaatctgcagatctaaaga 173  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  6617 cgctcttctattctattattttcttaatctgcagaactaaaga 6575  T

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