View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20615_low_4 (Length: 383)
Name: NF20615_low_4
Description: NF20615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20615_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 5224364 - 5223997
Alignment:
| Q |
1 |
atcctaacccaaaatccgaatcacaaaccgatccacaacccgaatcagaatcaccatccgcatcaagccccaccgcacgcggcgtcaaagacgacatctc |
100 |
Q |
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| T |
5224364 |
atcctaacccaaaatccgaatcacaaaccgatccacagcccgaatcagaatcaccatccgcatcaagccccaccgcacgcggcgtcaaagacgacatctc |
5224265 |
T |
|
| Q |
101 |
cgagctaacaaaatccttttcccgccaattctggggcgtcgcttctttcctagctccacctcccgatcacgatcacgattctaaaactcgcgattccgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5224264 |
cgagctaacaaaatccttttcccgccaattctggggcgtcgcttctttcctagcaccacctcccgatcacgatcacgattctaaaactcgcgattccgat |
5224165 |
T |
|
| Q |
201 |
ccgaatctcgctgatgaagatgttatcgctggaatccgaagcgattttgctgaaattagtggaacattcaaaagcggaatctcgaagctttctggtaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5224164 |
ccgaatctcgctgatgaagatgttatcgctggaatccgaagcgattttgctgaaattagtggaaaattcaaaagcggaatctcgaagctttctggtaata |
5224065 |
T |
|
| Q |
301 |
aaactgtttctgaattcacgaagatcgcttcgagttttcttcaaattggatctgaagaggaatatgat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5224064 |
aaactgtttctgaattcacgaagatcgcttcgagttttcttcaaattggatctgaagaggaatatgat |
5223997 |
T |
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