View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20615_low_7 (Length: 251)
Name: NF20615_low_7
Description: NF20615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20615_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 2431300 - 2431055
Alignment:
| Q |
6 |
actgtgttagcttatactgatatctaatgagagtttactattttgtccaagttaccctacttttttaactgcatcttgatatcaataatatgaaactcag |
105 |
Q |
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| T |
2431300 |
actgtgttagcttatactgatatctaatgagagtttactattttgtccaagttaccctacttttttaactgcatcttgatatcaataatatgaaactcag |
2431201 |
T |
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| Q |
106 |
tgtaaaatagttgattctcattagacgcaagcgtaaaactgatttacatagaccatgttaaactctaattttatagtacataatatatactttgcctttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431200 |
tgtaaaatagttgattctcattagacgcaagcgtaaaactgatttacatagaccatgttaaactctaattttatagtacataatatatactttgcctttc |
2431101 |
T |
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| Q |
206 |
gaaataaggcctttgaaatgttaaaataaattgatgaataataatt |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2431100 |
gaaataaggcctttgaaatgttaaaataaattgataaataataatt |
2431055 |
T |
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