View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20615_low_8 (Length: 226)

Name: NF20615_low_8
Description: NF20615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20615_low_8
NF20615_low_8
[»] chr3 (5 HSPs)
chr3 (171-226)||(24754373-24754428)
chr3 (171-226)||(24758012-24758067)
chr3 (171-226)||(24763370-24763425)
chr3 (171-226)||(24767009-24767064)
chr3 (191-226)||(24994958-24994993)
[»] scaffold0726 (1 HSPs)
scaffold0726 (171-226)||(6445-6501)


Alignment Details
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 24754373 - 24754428
Alignment:
Q  171 ggaaaagtgaaaagaaattataatatttattactgcaaatcaagaaaataaaataa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24754373 ggaaaagtgaaaagaaattataatatttattactgcaaatcaagaaaataaaataa 24754428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 24758012 - 24758067
Alignment:
Q  171 ggaaaagtgaaaagaaattataatatttattactgcaaatcaagaaaataaaataa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24758012 ggaaaagtgaaaagaaattataatatttattactgcaaatcaagaaaataaaataa 24758067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 24763370 - 24763425
Alignment:
Q  171 ggaaaagtgaaaagaaattataatatttattactgcaaatcaagaaaataaaataa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24763370 ggaaaagtgaaaagaaattataatatttattactgcaaatcaagaaaataaaataa 24763425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 24767009 - 24767064
Alignment:
Q  171 ggaaaagtgaaaagaaattataatatttattactgcaaatcaagaaaataaaataa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24767009 ggaaaagtgaaaagaaattataatatttattactgcaaatcaagaaaataaaataa 24767064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 24994993 - 24994958
Alignment:
Q  191 taatatttattactgcaaatcaagaaaataaaataa 226  Q
    ||||||||||||| ||||||||||||||||||||||    
T  24994993 taatatttattaccgcaaatcaagaaaataaaataa 24994958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 6445 - 6501
Alignment:
Q  171 ggaaaagtgaaaagaaat-tataatatttattactgcaaatcaagaaaataaaataa 226  Q
    ||||||||||||| |||  | ||||||||||||| |||||||||||| |||||||||    
T  6445 ggaaaagtgaaaaaaaaaatctaatatttattaccgcaaatcaagaacataaaataa 6501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University