View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20616_high_10 (Length: 310)
Name: NF20616_high_10
Description: NF20616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20616_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 43866657 - 43866926
Alignment:
| Q |
29 |
actacttagtataagacaaagagttaagtaaga---ttacaagcaatttcaagattttgctcnnnnnnnnnnnnnnnnnnngcgatttcaagattacact |
125 |
Q |
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| T |
43866657 |
actacatagtataagacaaagagttaagtaagaagattacaagcaatttcaagattttgctcacaaaaaaaaaa-------gcgatttcaagattacact |
43866749 |
T |
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| Q |
126 |
attcagtcagacttgagaaagtcaaagcttagcaaatttatttggcaatccaaaaataatagtggagctaggaattgacatgtagattaccgatttgagt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43866750 |
attcagtcagacttgagaaagtcaaagcttagcaaatttatttggcaatccaaaaataatagtggagctaggaattgacatgtagattaccgatttgagt |
43866849 |
T |
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| Q |
226 |
tgaccaaaacggtgcggatcattgaagaactgagccattttagcagtcctaggattatgaacccacatagtattatc |
302 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43866850 |
tgaccaaaacggtgcggatcattgaaaaactgtgccattttagcagtcctaggattatgaacccacatagtattatc |
43866926 |
T |
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