View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20616_high_9 (Length: 312)
Name: NF20616_high_9
Description: NF20616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20616_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 861619 - 861902
Alignment:
| Q |
11 |
caaaggcagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacc |
110 |
Q |
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| T |
861619 |
caaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacc |
861718 |
T |
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| Q |
111 |
catagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagc |
210 |
Q |
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| T |
861719 |
catagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagc |
861818 |
T |
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| Q |
211 |
caagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
294 |
Q |
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| T |
861819 |
caagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
861902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 1222896 - 1223179
Alignment:
| Q |
11 |
caaaggcagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacc |
110 |
Q |
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| T |
1222896 |
caaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacc |
1222995 |
T |
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| Q |
111 |
catagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagc |
210 |
Q |
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| T |
1222996 |
catagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagc |
1223095 |
T |
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| Q |
211 |
caagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
294 |
Q |
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| T |
1223096 |
caagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
1223179 |
T |
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