View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20616_low_1 (Length: 300)
Name: NF20616_low_1
Description: NF20616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20616_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 47894895 - 47895094
Alignment:
| Q |
7 |
attaattttgtgtccagttttccagagattattacattagatgaacttcctccatcgagtatctggccgtctcaatttagagctcaagtaaccaaggaag |
106 |
Q |
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| T |
47894895 |
attaattttgtgtccagttttccagagattattacattagatgaactgcctcgatcaagtatctggccgtctcaatttagagctcaagtaaccaaggaag |
47894994 |
T |
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| Q |
107 |
atattggtctctacttttttgctaaagatgttaataggtttgttagacatttcttttctatatataatgacaagattagttttattctgtctactattaa |
206 |
Q |
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| T |
47894995 |
atattggtctctacttttttgctaaagatgttaataggtttgttagacatttcttttctatatataatgacaagattagttttattctgtctactattaa |
47895094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 47895126 - 47895181
Alignment:
| Q |
238 |
cacagctatgatacacattatagtagtttgatgaataagatgatcaagaattatat |
293 |
Q |
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| T |
47895126 |
cacagctatgatacacattatagtagtttgatgaataagatgatcaagaatgatat |
47895181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 31220407 - 31220208
Alignment:
| Q |
7 |
attaattttgtgtccagttttccagagattattacattagatgaacttcctccatcgagtatctggccgtctcaatttagagctcaagtaaccaaggaag |
106 |
Q |
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| T |
31220407 |
attaattttgtgtccagttttccagagattattacattagatgaactgcctcgatcgagtatctggccgtctcaatttagagctcaagtaaccaaggaag |
31220308 |
T |
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| Q |
107 |
atattggtctctacttttttgctaaagatgttaataggtttgttagacatttcttttctatatataatgacaagattagttttattctgtctactattaa |
206 |
Q |
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| T |
31220307 |
atattggtctctacttttttgctaaagatgttaataggtttgttagacatttcttttctatatataatgacaatattagttttattctttctactattaa |
31220208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 31214652 - 31214453
Alignment:
| Q |
7 |
attaattttgtgtccagttttccagagattattacattagatgaacttcctccatcgagtatctggccgtctcaatttagagctcaagtaaccaaggaag |
106 |
Q |
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| T |
31214652 |
attaattttgtgtccagttttccagagattattacattagatgaactgcctcgatctagtatctggccgtctcaatttagagctcaagtaaccaaggaag |
31214553 |
T |
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| Q |
107 |
atattggtctctacttttttgctaaagatgttaataggtttgttagacatttcttttctatatataatgacaagattagttttattctgtctactattaa |
206 |
Q |
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| T |
31214552 |
atattggtctctacttttttgctaaagatgttaataggtttgttagacatttcttttctatatataatgacaatattagttttattctttctactattaa |
31214453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 31214420 - 31214365
Alignment:
| Q |
238 |
cacagctatgatacacattatagtagtttgatgaataagatgatcaagaattatat |
293 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31214420 |
cacaactatgatacacattatagtagtttgatgaataagatgatcaagaatgatat |
31214365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 31220175 - 31220120
Alignment:
| Q |
238 |
cacagctatgatacacattatagtagtttgatgaataagatgatcaagaattatat |
293 |
Q |
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| T |
31220175 |
cacaactatgatacacattatagtagtttgatgaataagatgatcaagaatgatat |
31220120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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