View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20617_high_14 (Length: 249)
Name: NF20617_high_14
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20617_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 17658619 - 17658838
Alignment:
| Q |
26 |
cttgctctatgcgtcttgtgcagatgtagcggttaataaattttggttgtttnnnnnnnng--ctataacaggaaattgaattgatcttattggaatttt |
123 |
Q |
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| T |
17658619 |
cttgctctgtgcgtcttgtgcagatgtagcggttaataaattttggttgtttcaaaaaaaaaactataacaggaaattggattgatcttgttggaatttt |
17658718 |
T |
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| Q |
124 |
aggtgggttggatgtatggaacaatgacagaagatatactaactgggttgacgatacacaaaaaaggttggagatcggaattatgtacaccggatccaat |
223 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17658719 |
aggtgggttggatgtatggaacaatgactgaagatatactaactgggctgacgatacacaaaaaaggttggagatcggaattatgtacaccggatccaat |
17658818 |
T |
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| Q |
224 |
agccttcacaggttctgctc |
243 |
Q |
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|||||||||||||| ||||| |
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| T |
17658819 |
agccttcacaggttgtgctc |
17658838 |
T |
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