View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20617_high_4 (Length: 489)
Name: NF20617_high_4
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20617_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 46036324 - 46036785
Alignment:
| Q |
18 |
aaaataatacacataatagaattacaccgatatataat--aagaacttattgtattgtcgcataagtctatattatatctgtattttaaaataactcgat |
115 |
Q |
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| T |
46036324 |
aaaataatacacataatacaattacaccgatatataatgtaagaacttattgtattgtcgcataagtctatattatatctgtattttaaaataactcgat |
46036423 |
T |
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| Q |
116 |
tcttattgtatgttgatataaaattaatttacattgataatgcatctcaatttctcttttatttaaaagtttttgcatttttagcatatgttcacatgtt |
215 |
Q |
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| T |
46036424 |
tcttattgtatgttgatatgaaattaatttacattgataatgcatctcaatttctcttttatttaaaagtttttgcatttttagcatatgttcacatgtt |
46036523 |
T |
|
| Q |
216 |
tatgttgctnnnnnnnnnnnnnnnnnnnnnnnnntacacacccagttgtcacatgttcaaacggattggcttgtgcatcaagcaaattggtaatgatatt |
315 |
Q |
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| T |
46036524 |
tatgttgctaaaaagtaaaagtgaaaaaagaaaatacacacccagttgtcacatgttcaaacggattggcttgtgcatcaagcaaattggtaatgatatt |
46036623 |
T |
|
| Q |
316 |
gttgttattcgagatggtggaatccgtagaattgtcacaaatctgggtgtttgaaaattaatgcatacaaattagtaataaaaaggtcaatgaaatcaag |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46036624 |
gttgttactcgagatggtggaatccgtagaattgtcacaaatctgggtgtttgaaaattaatgcatacaaattagtaataaaaaggtcaatgaaatcaag |
46036723 |
T |
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| Q |
416 |
aattcgaaatttatataggaaaatgcttaatatactgataatgacaatataattgatacctt |
477 |
Q |
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| T |
46036724 |
aattcgaaatttatataggaaaatgcttaatatactgataatgacaatataattgatacctt |
46036785 |
T |
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