View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20617_high_5 (Length: 440)

Name: NF20617_high_5
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20617_high_5
NF20617_high_5
[»] chr7 (23 HSPs)
chr7 (95-351)||(48461985-48462245)
chr7 (127-351)||(7460563-7460791)
chr7 (132-352)||(22566300-22566523)
chr7 (136-343)||(34535884-34536095)
chr7 (131-278)||(36469805-36469950)
chr7 (136-282)||(34535695-34535837)
chr7 (162-347)||(6376392-6376583)
chr7 (135-275)||(48461793-48461931)
chr7 (382-440)||(48461901-48461959)
chr7 (130-283)||(24185664-24185815)
chr7 (130-214)||(17813971-17814054)
chr7 (136-214)||(7460876-7460953)
chr7 (136-248)||(10017894-10018005)
chr7 (133-213)||(24188205-24188284)
chr7 (204-279)||(7460840-7460915)
chr7 (183-275)||(8560676-8560768)
chr7 (136-282)||(6376626-6376771)
chr7 (135-253)||(43510880-43510996)
chr7 (144-248)||(9997935-9998038)
chr7 (136-211)||(43511188-43511262)
chr7 (382-440)||(7460816-7460874)
chr7 (174-219)||(24653704-24653749)
chr7 (204-275)||(24188172-24188243)
[»] scaffold0548 (1 HSPs)
scaffold0548 (130-351)||(3223-3449)
[»] chr4 (55 HSPs)
chr4 (130-351)||(11306445-11306671)
chr4 (133-347)||(4416474-4416691)
chr4 (135-281)||(45505327-45505472)
chr4 (132-347)||(37724436-37724654)
chr4 (132-343)||(45505056-45505271)
chr4 (136-281)||(4416745-4416889)
chr4 (129-275)||(17524198-17524343)
chr4 (135-347)||(48845910-48846126)
chr4 (133-276)||(48845710-48845852)
chr4 (133-286)||(18414949-18415101)
chr4 (135-254)||(43913394-43913512)
chr4 (131-281)||(49984066-49984215)
chr4 (149-282)||(18414736-18414868)
chr4 (132-343)||(17524405-17524619)
chr4 (136-271)||(36752860-36752994)
chr4 (177-351)||(20870869-20871049)
chr4 (138-280)||(4592624-4592765)
chr4 (136-282)||(52485343-52485488)
chr4 (135-343)||(52485542-52485755)
chr4 (127-254)||(46397298-46397424)
chr4 (133-341)||(49983791-49984004)
chr4 (134-214)||(37724730-37724809)
chr4 (131-254)||(20269159-20269281)
chr4 (150-254)||(16399210-16399313)
chr4 (133-271)||(2516467-2516604)
chr4 (132-214)||(45170850-45170931)
chr4 (132-253)||(48658328-48658448)
chr4 (221-281)||(37724692-37724752)
chr4 (163-286)||(54702252-54702376)
chr4 (134-244)||(20870799-20870906)
chr4 (138-239)||(12292892-12292992)
chr4 (132-213)||(20871138-20871217)
chr4 (162-214)||(45170681-45170733)
chr4 (135-213)||(20268894-20268972)
chr4 (206-281)||(45170696-45170771)
chr4 (222-343)||(20268952-20269078)
chr4 (132-253)||(31141676-31141796)
chr4 (134-198)||(5665794-5665857)
chr4 (188-341)||(2515741-2515904)
chr4 (132-254)||(12293192-12293313)
chr4 (187-343)||(43913594-43913755)
chr4 (162-210)||(4592404-4592452)
chr4 (163-213)||(16398941-16398991)
chr4 (131-213)||(31143734-31143815)
chr4 (162-215)||(24671978-24672031)
chr4 (221-274)||(45170819-45170872)
chr4 (207-271)||(20871109-20871173)
chr4 (206-253)||(24671993-24672040)
chr4 (130-165)||(43913745-43913780)
chr4 (204-286)||(5665735-5665817)
chr4 (204-254)||(40426094-40426143)
chr4 (173-210)||(20870893-20870930)
chr4 (172-213)||(21376114-21376155)
chr4 (162-254)||(12714776-12714868)
chr4 (131-202)||(21376378-21376451)
[»] chr1 (37 HSPs)
chr1 (131-351)||(33459891-33460115)
chr1 (131-347)||(19987330-19987550)
chr1 (135-343)||(37245637-37245840)
chr1 (131-343)||(42604626-42604842)
chr1 (131-286)||(8718459-8718613)
chr1 (133-269)||(31872879-31873013)
chr1 (144-343)||(34518155-34518358)
chr1 (131-282)||(35795309-35795459)
chr1 (135-343)||(48171636-48171849)
chr1 (135-280)||(143082-143226)
chr1 (136-275)||(33460164-33460297)
chr1 (130-280)||(3072973-3073122)
chr1 (133-271)||(42604907-42605044)
chr1 (135-341)||(35795518-35795729)
chr1 (135-282)||(14420046-14420192)
chr1 (133-282)||(18519315-18519463)
chr1 (130-275)||(34517959-34518103)
chr1 (136-280)||(22792546-22792689)
chr1 (135-341)||(22792290-22792501)
chr1 (133-274)||(3075195-3075326)
chr1 (135-343)||(142811-143024)
chr1 (135-275)||(48171442-48171573)
chr1 (136-214)||(31872709-31872786)
chr1 (135-281)||(19987601-19987746)
chr1 (162-275)||(13189179-13189292)
chr1 (204-330)||(18519533-18519663)
chr1 (136-211)||(18519627-18519701)
chr1 (206-275)||(31872749-31872818)
chr1 (221-343)||(25622664-25622792)
chr1 (133-185)||(37245932-37245983)
chr1 (162-202)||(14419846-14419886)
chr1 (129-213)||(25622602-25622685)
chr1 (130-185)||(8718402-8718456)
chr1 (136-211)||(36783415-36783489)
chr1 (235-286)||(14419883-14419934)
chr1 (382-440)||(48171543-48171601)
chr1 (162-239)||(30971849-30971926)
[»] chr8 (28 HSPs)
chr8 (132-347)||(34439421-34439639)
chr8 (136-340)||(16049683-16049889)
chr8 (135-254)||(9710216-9710334)
chr8 (127-282)||(4623061-4623215)
chr8 (127-282)||(7644772-7644925)
chr8 (131-282)||(25879564-25879713)
chr8 (132-281)||(34439219-34439367)
chr8 (135-275)||(16049480-16049619)
chr8 (136-275)||(34687755-34687893)
chr8 (135-343)||(7644986-7645196)
chr8 (139-274)||(18935323-18935457)
chr8 (133-243)||(4623406-4623515)
chr8 (187-347)||(4623269-4623433)
chr8 (133-214)||(18429440-18429520)
chr8 (132-254)||(18429618-18429738)
chr8 (136-275)||(18548539-18548677)
chr8 (132-271)||(18935050-18935188)
chr8 (127-275)||(7535527-7535674)
chr8 (135-274)||(21445985-21446121)
chr8 (162-343)||(18548736-18548920)
chr8 (162-286)||(25879817-25879941)
chr8 (132-198)||(7535297-7535362)
chr8 (222-286)||(23871184-23871248)
chr8 (133-281)||(32665816-32665961)
chr8 (204-281)||(18429481-18429558)
chr8 (177-215)||(4623376-4623414)
chr8 (136-213)||(23871002-23871078)
chr8 (382-434)||(18429528-18429580)
[»] chr2 (38 HSPs)
chr2 (134-351)||(29526786-29527007)
chr2 (127-347)||(44995257-44995479)
chr2 (131-347)||(13490170-13490390)
chr2 (132-351)||(27956722-27956944)
chr2 (136-286)||(32622451-32622600)
chr2 (136-281)||(24015813-24015956)
chr2 (132-254)||(26845475-26845597)
chr2 (135-254)||(29526596-29526713)
chr2 (130-280)||(3217280-3217429)
chr2 (131-233)||(39060304-39060405)
chr2 (133-246)||(13140288-13140400)
chr2 (136-343)||(6795372-6795583)
chr2 (130-286)||(3221089-3221244)
chr2 (142-254)||(27957015-27957126)
chr2 (130-285)||(15988513-15988666)
chr2 (137-247)||(13490474-13490583)
chr2 (162-282)||(14473796-14473916)
chr2 (131-211)||(32622214-32622293)
chr2 (133-275)||(1352830-1352971)
chr2 (134-254)||(24065872-24065992)
chr2 (136-214)||(1353137-1353214)
chr2 (133-247)||(43971815-43971928)
chr2 (133-281)||(43513826-43513973)
chr2 (206-280)||(1353100-1353174)
chr2 (133-318)||(6412463-6412651)
chr2 (133-213)||(13140598-13140677)
chr2 (127-202)||(14473498-14473572)
chr2 (139-240)||(37762315-37762415)
chr2 (162-286)||(24284062-24284186)
chr2 (139-202)||(6795185-6795247)
chr2 (206-280)||(13140560-13140634)
chr2 (204-274)||(32622257-32622327)
chr2 (130-202)||(3217501-3217572)
chr2 (132-199)||(15988010-15988074)
chr2 (204-280)||(15988050-15988125)
chr2 (158-202)||(32644388-32644432)
chr2 (137-213)||(36006244-36006319)
chr2 (162-214)||(43531954-43532005)
[»] scaffold0056 (2 HSPs)
scaffold0056 (133-343)||(62925-63138)
scaffold0056 (127-281)||(62718-62871)
[»] chr5 (11 HSPs)
chr5 (130-351)||(33992330-33992556)
chr5 (129-286)||(16642744-16642900)
chr5 (131-272)||(33992612-33992752)
chr5 (132-254)||(19935431-19935551)
chr5 (136-254)||(25508099-25508216)
chr5 (208-351)||(16642937-16643086)
chr5 (173-254)||(34065287-34065368)
chr5 (136-200)||(19328409-19328472)
chr5 (164-240)||(32290831-32290905)
chr5 (162-283)||(32291060-32291181)
chr5 (134-211)||(19935738-19935814)
[»] chr3 (20 HSPs)
chr3 (136-347)||(54341204-54341418)
chr3 (132-347)||(33419738-33419957)
chr3 (161-282)||(33419564-33419686)
chr3 (127-274)||(51388033-51388180)
chr3 (162-343)||(37285749-37285934)
chr3 (163-274)||(19540851-19540962)
chr3 (162-339)||(30547936-30548120)
chr3 (164-249)||(40484929-40485013)
chr3 (133-253)||(19541129-19541248)
chr3 (133-244)||(30547738-30547846)
chr3 (135-253)||(33241846-33241963)
chr3 (136-238)||(54111417-54111518)
chr3 (133-253)||(37285546-37285665)
chr3 (132-207)||(54341438-54341512)
chr3 (131-343)||(48618476-48618693)
chr3 (132-283)||(48618747-48618897)
chr3 (173-285)||(7015373-7015486)
chr3 (191-286)||(7015590-7015685)
chr3 (165-202)||(39639875-39639912)
chr3 (143-207)||(21925393-21925456)
[»] chr6 (30 HSPs)
chr6 (133-347)||(10567659-10567875)
chr6 (135-275)||(34829829-34829968)
chr6 (143-280)||(10567471-10567607)
chr6 (132-252)||(6611934-6612053)
chr6 (133-273)||(17342886-17343025)
chr6 (136-286)||(28613430-28613578)
chr6 (162-342)||(32629252-32629437)
chr6 (162-280)||(6611637-6611755)
chr6 (131-279)||(11122171-11122317)
chr6 (144-244)||(29674857-29674956)
chr6 (131-271)||(32629059-32629198)
chr6 (133-272)||(22793299-22793437)
chr6 (137-247)||(6273889-6273997)
chr6 (177-281)||(29674918-29675022)
chr6 (131-202)||(28613191-28613261)
chr6 (136-210)||(22793606-22793679)
chr6 (130-239)||(28705819-28705927)
chr6 (223-286)||(17343147-17343210)
chr6 (206-281)||(28613236-28613311)
chr6 (206-341)||(34829622-34829762)
chr6 (204-273)||(22793572-22793641)
chr6 (129-210)||(34829575-34829655)
chr6 (163-238)||(13498388-13498463)
chr6 (152-202)||(6210296-6210345)
chr6 (177-271)||(28705759-28705852)
chr6 (204-275)||(6273656-6273727)
chr6 (177-242)||(11121939-11122005)
chr6 (133-202)||(7213370-7213436)
chr6 (132-201)||(29675189-29675257)
chr6 (138-214)||(6273620-6273695)
[»] scaffold0400 (2 HSPs)
scaffold0400 (134-280)||(9841-9986)
scaffold0400 (132-231)||(9576-9674)
[»] scaffold0365 (2 HSPs)
scaffold0365 (134-280)||(10484-10629)
scaffold0365 (132-231)||(10219-10317)
[»] scaffold0015 (2 HSPs)
scaffold0015 (132-207)||(47417-47491)
scaffold0015 (136-192)||(47291-47346)
[»] scaffold0045 (1 HSPs)
scaffold0045 (132-200)||(29607-29674)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 95 - 351
Target Start/End: Complemental strand, 48462245 - 48461985
Alignment:
Q  95 cctttgaaaaattgaatccttttatgtttatgaaaaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgtt 194  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48462245 cctttgaaaaattgaatccttttatgtttatgaaaaaagt-ttaattacatgtttgatctcttatgttttattttagtttttaagttggtcccttatgtt 48462147  T
Q  195 ttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtt 289  Q
    |||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||     |||||    
T  48462146 ttaaaagtttcaagttggtcatttatgttttaaaagttttaagttgatccaaaacgttacccgccttggaataagttagtctcttccgtcacttaacgtt 48462047  T
Q  290 taaagatttggattgacaatatgggtgatagaacttaacttatatagaaaatcaatttaaaa 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48462046 taaagatttggattgacaatatgggtgatagaacttaacttatatagaaaatcaatttaaaa 48461985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 127 - 351
Target Start/End: Original strand, 7460563 - 7460791
Alignment:
Q  127 aaaaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgtttta 226  Q
    |||||||  |||||| ||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||| | |||||||||||  ||||||||||    
T  7460563 aaaaaagatttaatttcatgtttgatcccttatgttt-attttagttttcaagttgatcccttatgttttaaaaatttcaagttggtcccttacgtttta 7460661  T
Q  227 aaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgataga 321  Q
    ||| |||||||||||||||||||  ||||| | ||| ||||||||||||| |||||||     |||||||||||||||| |||| |||| ||||||||||    
T  7460662 aaaatttcaagttggtccaaaacactacccacgttgaaataagttagtcttttccgtcacttaacgtttaaagatttgggttgataatacgggtgataga 7460761  T
Q  322 acttaacttatatagaaaatcaatttaaaa 351  Q
    |||||||||||||||||||||| |||||||    
T  7460762 acttaacttatatagaaaatcagtttaaaa 7460791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 132 - 352
Target Start/End: Original strand, 22566300 - 22566523
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||||||||    
T  22566300 aggcttaattgcatgtttgatcccttatgttt-attttagtttttaaattggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagt 22566398  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgatagaa-ctt 325  Q
    |||  |||||||||||||||||| | | ||| ||||| |||||| ||||||||     |||||||||||||||| |||||| ||||| | |||||| |||    
T  22566399 ttc--gttggtccaaaacgttactcacgttgaaataaattagtcccttccgtcatttaacgtttaaagatttgggttgacagtatggctcatagaacctt 22566496  T
Q  326 aacttatatagaaaatcaatttaaaat 352  Q
    ||| |||||||||||||| ||||||||    
T  22566497 aacatatatagaaaatcagtttaaaat 22566523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 136 - 343
Target Start/End: Complemental strand, 34536095 - 34535884
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||| ||||||||| || |||||||||||||||||||||||  |||||||||| | |||||||||  |||||||||| ||||||||    
T  34536095 ttaattgcatgtttgatcccttatgttt-atcttagtttttaagttggtcccttacattttaaaagttttaagttggtctcttacgttttagaagtttca 34535997  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgatagaacttaactt 330  Q
    ||||| || |||||||||| | | |||||||||||||||| |||| |||     |||||| |||||| || |||||||||||| | || |||||||||||    
T  34535996 agttgatcaaaaacgttactcacgttggaataagttagtcccttcggtcacttaacgtttgaagattcgggttgacaatatggattatggaacttaactt 34535897  T
Q  331 atatagaaaatca 343  Q
    || ||||||||||    
T  34535896 atttagaaaatca 34535884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 36469950 - 36469805
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  || ||||||| |  |||||||||||| | |||||||||  ||||||||||||||    
T  36469950 aaggcttaattgcatgtttgatctcttatgttt-attttagtttcaaa-ttggtccttcgtgttttaaaagttttaagttggtcccttacgttttaaaag 36469853  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctct 278  Q
    |||||||||||||||||| ||||| | | |||||||||||||||||||    
T  36469852 tttcaagttggtccaaaatgttactcacgttggaataagttagtctct 36469805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 136 - 282
Target Start/End: Original strand, 34535695 - 34535837
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||   ||||||||||| ||||| |||||  ||||||||||||||||| |    
T  34535695 ttaattgcatgtttgatcccttatgttt-attttagtttttaagttggtctct---gttttaaaagtttcaagctggtcccttacgttttaaaagtttta 34535790  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttccg 282  Q
    ||||||||||||||||||| |   |||||||||||||||| ||||||    
T  34535791 agttggtccaaaacgttactcatattggaataagttagtcccttccg 34535837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 162 - 347
Target Start/End: Original strand, 6376392 - 6376583
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||||| |||||||||||| | ||||||||||||||| | |||||||||  ||| |||||||||||||||||||| | ||||||||| | | | ||    
T  6376392 tttattttaggttttaagttggttctttatgttttaaaagttttaagttggtcccttaggttttaaaagtttcaagttgattcaaaacgtttctcacatt 6376491  T
Q  262 ggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatgggtgatagaacttaacttatatagaaaatcaattt 347  Q
     |||||||||||||||||  ||||      ||||||||||||| | ||| |||| ||||||||  || ||||||||| ||||||||||||||    
T  6376492 tgaataagttagtctcttttgtcacttgtccgtttaaagattttggttggcaatgtgggtgatgaaatttaacttatttagaaaatcaattt 6376583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 48461793 - 48461931
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||| ||| ||||||||||||||| | |||||||||  ||||||||||||||| |     
T  48461793 cttaattgcatgtt-gatctcttatgtttg-ttttagtttttaagttgatcctttatgttttaaaagttttaagttggtctcttacgttttaaaagtatg 48461890  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    |||||| ||||||||||||| | | || |||||| ||||||    
T  48461891 aagttgatccaaaacgttactcacgttagaataaattagtc 48461931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 382 - 440
Target Start/End: Complemental strand, 48461959 - 48461901
Alignment:
Q  382 attaaacttaatattatgtcgcgaaaatgactaatttattctaacgtgagtaacgtttt 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48461959 attaaacttaatattatgtcgcgaaaatgactaatttattctaacgtgagtaacgtttt 48461901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 24185664 - 24185815
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    ||||| ||||||||||||||| || ||  ||||| ||||||| ||| |||||||||| ||||||||||||||| | || ||||||| ||| ||||||||     
T  24185664 aaaggtttaattgcatgtttggtcactcgtgttt-attttaggtttcaagttggtcctttatgttttaaaagttttaa-ttggtcacttatgttttaaag 24185761  T
Q  230 gtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgt 283  Q
    ||||||||||||||||||   |||| | | ||| |||||||||||| |||||||    
T  24185762 gtttcaagttggtccaaatatttactcacgttgaaataagttagtcccttccgt 24185815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 17813971 - 17814054
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    |||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||| |||| ||||||    
T  17813971 aaaggcttaattccatgtttgatctcttatgttt-attttaggtttcaagttggtctcttatgttttaaaagtttcaaattggtc 17814054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 7460953 - 7460876
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||| |||| ||||||    
T  7460953 ttaattgcatgtttgatcccttatgttt-attttagttttcaagttggtcacttatgttttaaaagtttcaaattggtc 7460876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 10018005 - 10017894
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    ||||||| ||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||| |  |||| |||  ||  |||||||||||||||    
T  10018005 ttaattgtatgtttggtctcttatgttt-attttaggttttaagttggtctcttatgttttaaaagttttcagttcgtctattttgttttaaaagtttca 10017907  T
Q  236 agttggtccaaaa 248  Q
    |||| ||| ||||    
T  10017906 agttagtctaaaa 10017894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 24188284 - 24188205
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggt 213  Q
    ||||||||||||||||||||| ||||||||| || |||| ||| |||||||||||||||||||||| ||| ||||||||||    
T  24188284 ggcttaattgcatgtttgatcgcttatgttt-atattaggtttcaagttggtcccttatgttttaagagtttcaagttggt 24188205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 7460915 - 7460840
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctctt 279  Q
    |||||||||||| ||| |||||||||||||||| |||||| |||||||||| | | ||||||||||||||||||||    
T  7460915 tcaagttggtcacttatgttttaaaagtttcaaattggtctaaaacgttactcacgttggaataagttagtctctt 7460840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 8560676 - 8560768
Alignment:
Q  183 gtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    ||||||||| |||||||||| | |||||||||   ||| |||||||||||||| |||||||||||||||||| | | ||| ||||||||||||    
T  8560676 gtcccttatattttaaaagttttaagttggtcccctacattttaaaagtttcatgttggtccaaaacgttactcacattgtaataagttagtc 8560768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 282
Target Start/End: Complemental strand, 6376771 - 6376626
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    ||||||||| ||||||||  |||||||| ||||||| |||||||||||||  ||||||||||||||  | | ||||||   ||||||||||||  ||| |    
T  6376771 ttaattgcaagtttgatccgttatgttt-attttaggttttaagttggtcatttatgttttaaaagctttaggttggtatcttacgttttaaagttttta 6376673  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttccg 282  Q
    |||| |||||||||||||  | | ||  |||||||||||| ||||||    
T  6376672 agttagtccaaaacgttattcacgttaaaataagttagtcccttccg 6376626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 43510880 - 43510996
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||| |||||||| ||||||||| ||||||| |  |||||||||  | | ||||||||||||||| |||||||| |   |||  ||||||| |||||    
T  43510880 cttaattacatgtttggtctcttatg-tttatttcaagttttaagttaattcattatgttttaaaagtttcaagttgat-tcttatattttaaatgtttc 43510977  T
Q  235 aagttggtccaaaacgtta 253  Q
    |||||||||||||||||||    
T  43510978 aagttggtccaaaacgtta 43510996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 9998038 - 9997935
Alignment:
Q  144 atgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtc 243  Q
    ||||||| |||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||    |||| |||  ||| ||||||||||||||||||| |||    
T  9998038 atgtttggtctcttatgttt-attataggttttaggttggtcccttatgttttaaatgttgttagttcgtctcttatgttttaaaagtttcaagttagtc 9997940  T
Q  244 caaaa 248  Q
     ||||    
T  9997939 gaaaa 9997935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 43511262 - 43511188
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttg 211  Q
    ||||||| ||||||||||||||||| |||||||||  ||||||| || ||  ||||||||||||||| ||||||||    
T  43511262 ttaattgtatgtttgatctcttatg-tttattttaagttttaagatgatcttttatgttttaaaagtttcaagttg 43511188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 7460816 - 7460874
Alignment:
Q  382 attaaacttaatattatgtcgcgaaaatgactaatttattctaacgtgagtaacgtttt 440  Q
    |||||||| ||||| |||||||||||  |||||| |||||| |||||||||||||||||    
T  7460816 attaaactcaatatcatgtcgcgaaagagactaacttattccaacgtgagtaacgtttt 7460874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 24653749 - 24653704
Alignment:
Q  174 tttaagttggtcccttatgttttaaaagtctcaagttggtcattta 219  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||||    
T  24653749 tttaaattggtcccatatcttttaaaagtctcaagttggtcattta 24653704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 24188243 - 24188172
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    |||||||||||  ||| ||||||| |||||||||||||| ||||| ||||| | | | ||||||||||||||    
T  24188243 tcaagttggtcccttatgttttaagagtttcaagttggttcaaaatgttactcacgtcggaataagttagtc 24188172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 130 - 351
Target Start/End: Complemental strand, 3449 - 3223
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  3449 aaaggcttaattgcatgtttgatcccttatgttt-attttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaa 3351  T
Q  230 gtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac-----gtttaaagatttggattgacaatatgggtgatagaa-c 323  Q
    ||||||||||||||||||||||||| | | |||||||||||||||| |||| |||||     ||||| |||||||| ||||||||||||||||||||| |    
T  3350 gtttcaagttggtccaaaacgttactcactttggaataagttagtcccttctgtcacttaatgtttatagatttgggttgacaatatgggtgatagaacc 3251  T
Q  324 ttaacttatatagaaaatcaatttaaaa 351  Q
    ||||||||| |||||||||| |||||||    
T  3250 ttaacttatttagaaaatcagtttaaaa 3223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 9e-71; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 130 - 351
Target Start/End: Complemental strand, 11306671 - 11306445
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  11306671 aaaggcttaattgcatgtttgatcccttatgttt-attttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaa 11306573  T
Q  230 gtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac-----gtttaaagatttggattgacaatatgggtgatagaa-c 323  Q
    ||||||||||||||||||||||||| | | |||||||||||||||| |||| |||||     ||||| |||||||| ||||||||||||||||||||| |    
T  11306572 gtttcaagttggtccaaaacgttactcactttggaataagttagtcccttctgtcacttaatgtttatagatttgggttgacaatatgggtgatagaacc 11306473  T
Q  324 ttaacttatatagaaaatcaatttaaaa 351  Q
    ||||||||| |||||||||| |||||||    
T  11306472 ttaacttatttagaaaatcagtttaaaa 11306445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 133 - 347
Target Start/End: Original strand, 4416474 - 4416691
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||||||| ||||  ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  4416474 ggcttaattgcatgtttgatcccttacattt-attttagtttttaagttgatcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagtt 4416572  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac-----gtttaaagatttggattgacaatatgggtgatagaacttaa 327  Q
    |||||||||||||||||||||| | | |||||||||||||||| |||| |||||     |||| |||||| || || ||||||||||||||  |||||||    
T  4416573 tcaagttggtccaaaacgttactcacgttggaataagttagtcccttcagtcacttaatgtttgaagattcgg-tttacaatatgggtgatgaaacttaa 4416671  T
Q  328 cttatatagaaaatcaattt 347  Q
    ||||| ||||||||||||||    
T  4416672 cttatttagaaaatcaattt 4416691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 45505472 - 45505327
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  45505472 cttaattgcatgtttgatcccttatgttt-attttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttc 45505374  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    |||||||||||||||||||| | | || |||||||||||||||||||    
T  45505373 aagttggtccaaaacgttactcacattagaataagttagtctcttcc 45505327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 132 - 347
Target Start/End: Original strand, 37724436 - 37724654
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| | ||| ||||||||| |||||||||||  |||| |||||||| |    
T  37724436 aggcttaattgcatgtatgatctcttatgttt-attttagtttttaaattggtccttcatgatttaaaagtttcaagttggtcccttacattttaaaatt 37724534  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac----gtttaaagatttggattgacaatatgggtgatagaacttaa 327  Q
    ||||| ||||||||||||||||| |   |||||||||||||||||||||||||||     |||||||||   | |||||||||||| |||| ||||||||    
T  37724535 ttcaaattggtccaaaacgttactcatgttggaataagttagtctcttccgtcacttaaatttaaagatccaggttgacaatatggatgatggaacttaa 37724634  T
Q  328 cttatatagaaaatcaattt 347  Q
    ||||| || |||||||||||    
T  37724635 cttatttaaaaaatcaattt 37724654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 132 - 343
Target Start/End: Original strand, 45505056 - 45505271
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||  || ||||||||||||| ||| ||||||   |||||||||||||||    
T  45505056 aggcttaattgcatgtttgatcccttatgttt-attttagtttttaagttggttactaatgttttaaaagtttcatgttggttccttacgttttaaaagt 45505154  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagttagtctcttc-----cgtcacgtttaaagatttggattgacaatatgggtgatagaactta 326  Q
    ||||||||||||||||||| ||| | | ||||||||| |||||| ||||     | | |||||||||||||  | ||||||||||||||||| |||||||    
T  45505155 ttcaagttggtccaaaacgctactcacgttggaataaattagtcccttcaatcacttaacgtttaaagattcaggttgacaatatgggtgatggaactta 45505254  T
Q  327 acttatatagaaaatca 343  Q
    | |||| ||||||||||    
T  45505255 atttatttagaaaatca 45505271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 136 - 281
Target Start/End: Complemental strand, 4416889 - 4416745
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||||  |||| |||||||||||| |    
T  4416889 ttaattgcatgtttgatctcttatgttt-attttagtttttaagttggtcccttatgttttaaaaattttaagttggtcccttacattttaaaagtttta 4416791  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    ||||||||||||||||||| | | |||||||||||||||| |||||    
T  4416790 agttggtccaaaacgttactcacattggaataagttagtcccttcc 4416745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 17524198 - 17524343
Alignment:
Q  129 aaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaa 228  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||  ||| ||||||||    
T  17524198 aaaaggcttaattgcatgtttgatcccttatgttt-attttagttttcaagttggtcccttatgttttaaaagtttcaagttgatctcttatgttttaaa 17524296  T
Q  229 agtttcaagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    |||||||| ||| ||||||||||||| | | ||||||||||||||||    
T  17524297 agtttcaaattgatccaaaacgttactcacattggaataagttagtc 17524343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 135 - 347
Target Start/End: Complemental strand, 48846126 - 48845910
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| | ||| ||||   ||| ||||||||||||||    
T  48846126 cttaattgcatgtttgatcccttatgttt-attttactttttaagttggtcccttatgttttaaaagttttaagatggtgccttatgttttaaaagtttc 48846028  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcacgt-----ttaaagatttggattgacaatatgggtgatagaacttaact 329  Q
    ||||||| | |||||||||| | | ||||||||| ||||||||||| ||||| |     ||||||||| || |||| ||||||||||||  |||||||||    
T  48846027 aagttggactaaaacgttactcacgttggaataaattagtctcttcagtcacttaacgattaaagattcgggttgagaatatgggtgatgaaacttaact 48845928  T
Q  330 tatatagaaaatcaattt 347  Q
    ||| || |||| ||||||    
T  48845927 tatttaaaaaaccaattt 48845910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 48845710 - 48845852
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||  ||||||||||||| ||    
T  48845710 ggcttaattgcatgtttgatctcttatgttt-attttagtttataagttggccccttatgttttaaaagtttcaagttggtcccttacgttttaaaaatt 48845808  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtct 276  Q
    | |||||||||||||| ||||| | | ||| |||||||||||||    
T  48845809 ttaagttggtccaaaatgttactcacattgaaataagttagtct 48845852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 133 - 286
Target Start/End: Complemental strand, 18415101 - 18414949
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||||||| |||||||||| ||||||||| ||||||||||| |||||| ||| | ||||||||||||| |||||||||||  || |||||||||||||    
T  18415101 ggcttaattgtatgtttgatcccttatgttt-attttagttttcaagttgatccttcatgttttaaaagtttcaagttggtcccttgcgttttaaaagtt 18415003  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    |||||||||||||||||||||| | | ||| ||||||||||||||||| |||||    
T  18415002 tcaagttggtccaaaacgttactcacgttgaaataagttagtctcttctgtcac 18414949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 43913394 - 43913512
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||| | || |||||| |||||||||||||||||||    
T  43913394 cttaattgcatgtttgatcccttatgttt-attttagtttttaagttggtcccttatattttaaaagttttaaattggtcttttacgttttaaaagtttc 43913492  T
Q  235 aagttggtccaaaacgttac 254  Q
    |||||| |||||||||||||    
T  43913493 aagttgatccaaaacgttac 43913512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 131 - 281
Target Start/End: Complemental strand, 49984215 - 49984066
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    ||||||||||||||||||||||| ||||||||| ||||||| ||| | |||||| ||||||||||||||||| |||||||||||  ||| ||||||||      
T  49984215 aaggcttaattgcatgtttgatcccttatgttt-attttaggtttcatgttggttccttatgttttaaaagtttcaagttggtcccttatgttttaaagt 49984117  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    |||||||||||||||||||||||| | | |||||||||||||||| |||||    
T  49984116 tttcaagttggtccaaaacgttactcacgttggaataagttagtcccttcc 49984066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 18414736 - 18414868
Alignment:
Q  149 tgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaa 248  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||  |||| |||||||| |||||||||||| |||||    
T  18414736 tgatcccttatgttt-attttaatttttaagttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaaatttcaagttggttcaaaa 18414834  T
Q  249 cgttacccgccttggaataagttagtctcttccg 282  Q
    |||||| | | |||||||||||||||||||||||    
T  18414835 cgttactcacgttggaataagttagtctcttccg 18414868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 343
Target Start/End: Complemental strand, 17524619 - 17524405
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||||||| | |||| |||||||||| |||||||| ||  ||| |||||||||||    
T  17524619 aggcttaattgcatgtttgatctcttacgttt-attttagttttcaagttggtactttattttttaaaagtttcaagttgatcccttatgttttaaaagt 17524521  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgatagaactta 326  Q
    || ||||||| ||||||||||||   | |||||||||||||||| |||| |||     || |||||||||| ||  ||||||||||||||||  |||||     
T  17524520 tttaagttggaccaaaacgttacttacgttggaataagttagtcccttcagtcacttaacatttaaagattcgggctgacaatatgggtgatgaaactt- 17524422  T
Q  327 acttatatagaaaatca 343  Q
    ||| || ||||||||||    
T  17524421 actcatttagaaaatca 17524405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 36752860 - 36752994
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||| ||||||||||||| ||||||||| |||||| ||||||| ||||||| | ||||||||||||| |||||||||||  || |||||||||| |||||    
T  36752860 ttaaatgcatgtttgatcccttatgttt-attttaatttttaaattggtccttcatgttttaaaagtttcaagttggtcccttgcgttttaaaaatttca 36752958  T
Q  236 agttggtccaaaacgttacccgccttggaataagtt 271  Q
    ||||||||||||||||||||| | ||||||||||||    
T  36752959 agttggtccaaaacgttacccacgttggaataagtt 36752994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 177 - 351
Target Start/End: Original strand, 20870869 - 20871049
Alignment:
Q  177 aagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtct 276  Q
    |||||||||| ||| ||||||||||| | |||||||||  ||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||     
T  20870869 aagttggtcc-ttacgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataagttagtcc 20870967  T
Q  277 cttccgtc-----acgtttaaagattt-ggattgacaatatgggtgatagaa-cttaacttatatagaaaatcaatttaaaa 351  Q
    ||||||||     |||||||||| ||| || ||||||||||||| ||||||| ||||| |||| |||||||||| |||||||    
T  20870968 cttccgtcacttaacgtttaaagttttggggttgacaatatgggcgatagaaccttaatttatttagaaaatcagtttaaaa 20871049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 4592765 - 4592624
Alignment:
Q  138 aattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaag 237  Q
    ||||||||||||| || ||||||||| ||||||| ||||||||||||| |||||||||||||||| | |||||||||  ||| ||||||| |||||||||    
T  4592765 aattgcatgtttggtcccttatgttt-attttaggttttaagttggtctcttatgttttaaaagttttaagttggtcccttatgttttaacagtttcaag 4592667  T
Q  238 ttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
    ||||| ||||||||||| | | || |||||| |||||||||||    
T  4592666 ttggttcaaaacgttactcacattagaataaattagtctcttc 4592624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 136 - 282
Target Start/End: Original strand, 52485343 - 52485488
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||  |||||||||| |||||||||    
T  52485343 ttaattgcatgtttgatccattatgttt-attttagtttttaagttgatcccttatgttttaaaagttttaagttggttctttacgttttcaaagtttca 52485441  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttccg 282  Q
     ||| ||||||||| ||||   | ||| ||||||||| |||||||||    
T  52485442 tgttagtccaaaacattactgacattgaaataagttaatctcttccg 52485488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 135 - 343
Target Start/End: Complemental strand, 52485755 - 52485542
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagttttt-aagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagttt 233  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||||| | |||| ||||  |||| ||||||||||||    
T  52485755 cttaattgcatgtttgatcttttatgttt-attttagttttttaagttggtcccttatattttaaaagttttaagtgggtctcttacattttaaaagttt 52485657  T
Q  234 caagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgatagaacttaac 328  Q
    ||||| |||||||||  |||| | | || |||||| |||||| |||| |||     |||||||||||||  | |||||||||||||||||  ||||||      
T  52485656 caagtcggtccaaaatattactcacgttagaataaattagtcccttcagtcatttaacgtttaaagattcaggttgacaatatgggtgatgaaacttatt 52485557  T
Q  329 ttatatagaaaatca 343  Q
    |||  ||||||||||    
T  52485556 ttaattagaaaatca 52485542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 46397298 - 46397424
Alignment:
Q  127 aaaaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgtttta 226  Q
    ||||||| |||||||||||||||||||   |||  |||||||||| |||  ||||| ||||| ||||||||||||| |||||||||||  ||||||||||    
T  46397298 aaaaaagacttaattgcatgtttgatcctatat-atttattttaggtttcgagttgatccctcatgttttaaaagtttcaagttggtcccttacgtttta 46397396  T
Q  227 aaagtttcaagttggtccaaaacgttac 254  Q
    ||||||| ||||||||||||||||||||    
T  46397397 aaagttttaagttggtccaaaacgttac 46397424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 133 - 341
Target Start/End: Original strand, 49983791 - 49984004
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||||||||||||||| || ||| || || ||||||| ||| |||||||||| ||||||||||||||| | |||||||||  ||| ||||||||| ||    
T  49983791 ggcttaattgcatgtttggtcccttgtgctt-attttagatttcaagttggtcctttatgttttaaaagtttgaagttggtcccttatgttttaaaaatt 49983889  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatgggtgatagaactta 326  Q
    | |||||||| ||||||||||| | | || |||||||||||||  ||||||||      || | |||||||||| |||||||| || ||| | ||| |||    
T  49983890 ttaagttggttcaaaacgttactcacatttgaataagttagtccattccgtcacttgatcggtcaaagatttgggttgacaatgtgagtggtggaattta 49983989  T
Q  327 acttatatagaaaat 341  Q
    |||||| ||||||||    
T  49983990 acttatttagaaaat 49984004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 37724809 - 37724730
Alignment:
Q  134 gcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  37724809 gcttaattgcatgtttgatctcttatgttt-attttagtttttaagttgatcccttaggttttaaaagtttcaagttggtc 37724730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 20269281 - 20269159
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    |||| |||||||||||||||||||| ||||||| ||||||  ||||||||||||| |||||||||||||| | | |||| | ||  |||||||||||| |    
T  20269281 aaggtttaattgcatgtttgatctcgtatgttt-attttacgttttaagttggtctcttatgttttaaaaatttaaagtcgttcccttacgttttaaagg 20269183  T
Q  231 tttcaagttggtccaaaacgttac 254  Q
    ||||||||||||||||||| ||||    
T  20269182 tttcaagttggtccaaaacattac 20269159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 16399313 - 16399210
Alignment:
Q  150 gatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaac 249  Q
    |||||||||||||| ||||||| |||||| ||||||| ||||||||||||| | | ||||||||| ||||||||||||| |||| | ||||||| |||||    
T  16399313 gatctcttatgttt-attttagattttaaattggtcctttatgttttaaaatttttaagttggtcgtttacgttttaaaggttttatgttggtcaaaaac 16399215  T
Q  250 gttac 254  Q
    |||||    
T  16399214 gttac 16399210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 271
Target Start/End: Complemental strand, 2516604 - 2516467
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||||||| ||||| ||||||| ||| ||||||  ||||  | |||||||||||||| |||| ||||||  ||||| |||||  |||    
T  2516604 ggcttaattgcatgtttgatcccttat-ttttattctaggttttaatatggtttcatatgttttaaaagtttcaaattggtcccttacgatttaatggtt 2516506  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagtt 271  Q
    ||| |||||||||||| ||||| | | ||||||||||||    
T  2516505 tcatgttggtccaaaatgttactcacgttggaataagtt 2516467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 45170931 - 45170850
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| | ||||||||||||| | |||||||||    
T  45170931 aggcttaattgcatgtttgatcccttatgttt-attttagtttttaaattggtccttcatgttttaaaagttttaagttggtc 45170850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 48658448 - 48658328
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||||||||||||||  ||| ||||| |||||||||||||| ||||||  | || |||||||||| | |||||||||  |||  ||||||||||    
T  48658448 aggcttaattgcatgtttgattccttttgttt-attttagtttttaaattggtcattcatattttaaaagttttaagttggtcccttagattttaaaagt 48658350  T
Q  232 ttcaagttggtccaaaacgtta 253  Q
    || ||||||||| |||||||||    
T  48658349 tttaagttggtcaaaaacgtta 48658328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 37724752 - 37724692
Alignment:
Q  221 gttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  37724752 gttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagttagtctcttcc 37724692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 54702376 - 54702252
Alignment:
Q  163 ttattttagtttttaagttggt-cccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    ||||||||| |||||||||||| ||||| |||||||||||| | |||||||||  ||| ||||||| ||||| |||||| | ||||| ||||| | | ||    
T  54702376 ttattttaggttttaagttggttcccttctgttttaaaagttttaagttggtcccttatgttttaacagttttaagttgattcaaaatgttactcacatt 54702277  T
Q  262 ggaataagttagtctcttccgtcac 286  Q
     |||||||| |||||||||||||||    
T  54702276 agaataagtcagtctcttccgtcac 54702252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 20870799 - 20870906
Alignment:
Q  134 gcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagttt 233  Q
    ||||||||||||||| |||  ||||||||| ||||||||||  ||||| ||||||||  |||||||||| |||||||||||  |||||||||||||||||    
T  20870799 gcttaattgcatgtt-gattccttatgttt-attttagtttccaagttcgtcccttacattttaaaagtttcaagttggtc-cttacgttttaaaagttt 20870895  T
Q  234 caagttggtcc 244  Q
     ||||||||||    
T  20870896 taagttggtcc 20870906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 12292892 - 12292992
Alignment:
Q  138 aattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaag 237  Q
    |||||||||||| ||| ||||||||| ||||||| ||| ||||||||||||| |||||||||||| ||||||||||   ||| ||||||||| ||| |||    
T  12292892 aattgcatgtttaatcccttatgttt-attttaggtttaaagttggtcccttttgttttaaaagtttcaagttggtaccttatgttttaaaaattttaag 12292990  T
Q  238 tt 239  Q
    ||    
T  12292991 tt 12292992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 20871217 - 20871138
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggt 213  Q
    ||||||||||||| |||| ||| ||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  20871217 aggcttaattgcacgtttcatcccttatgttt-attttagttttta-gttggtcctttatgttttaaaagtttcaagttggt 20871138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 45170681 - 45170733
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  45170681 tttattttagtttttaagttggtcccttaggttttaaaagtttcaagttggtc 45170733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 20268894 - 20268972
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatg-ttttaaaagtctcaagttggt 213  Q
    |||||||||||||||| | || ||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  20268894 cttaattgcatgtttggtttcgtatgttt-attttagattttaagttggtcccttatgtttttaaaagtttcaagttggt 20268972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 45170696 - 45170771
Alignment:
Q  206 aagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    |||||||||  ||| |||||||||||||||||||||||||||| ||||| | | ||||||||||||||||| ||||    
T  45170696 aagttggtcccttaggttttaaaagtttcaagttggtccaaaatgttactcacgttggaataagttagtctgttcc 45170771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 20268952 - 20269078
Alignment:
Q  222 ttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtca-----cgtttaaagatttggattgacaatatgggtg 316  Q
    ||||||||||||||||||||| ||||||||||| | | ||| |||||||||||||||||| | |     |||||||||||  || ||||||||||| |||    
T  20268952 ttttaaaagtttcaagttggttcaaaacgttactcacattgaaataagttagtctcttccataacttgtcgtttaaagatccgggttgacaatatgagtg 20269051  T
Q  317 atagaacttaacttatatagaaaatca 343  Q
    ||  || ||||||||| || |||||||    
T  20269052 atgaaatttaacttatttacaaaatca 20269078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 31141676 - 31141796
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    ||||||||||||||||||| || | ||||||| || |||| ||| |||||||||  ||||||||||||  | | ||||| |||  ||| |||||||||||    
T  31141676 aggcttaattgcatgtttggtcccgtatgttt-atcttaggtttcaagttggtcatttatgttttaaattttttaagttagtcccttatgttttaaaagt 31141774  T
Q  232 ttcaagttggtccaaaacgtta 253  Q
    ||||| || |||||||||||||    
T  31141775 ttcaaattcgtccaaaacgtta 31141796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 5665857 - 5665794
Alignment:
Q  134 gcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaa 198  Q
    |||||||||||||| |||||||||||| |||||||||| ||| ||||| ||||||||||||||||    
T  5665857 gcttaattgcatgtctgatctcttatg-tttattttaggtttcaagtttgtcccttatgttttaa 5665794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 341
Target Start/End: Original strand, 2515741 - 2515904
Alignment:
Q  188 ttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtca-- 285  Q
    ||||||||||||||| ||||| ||||| |||| ||||||  | |||||||||||| ||||||||||| | | || |||||||| |||| ||||| |||      
T  2515741 ttatgttttaaaagtttcaagctggtcctttatgttttaccaatttcaagttggttcaaaacgttactcacattagaataagtcagtcccttccatcaat 2515840  T
Q  286 ----cgtttaaagatttggattg----acaatatgggtgatagaacttaacttatatagaaaat 341  Q
        | ||||||||||  | |||    |||||||||||||| ||| ||||||||||||||||||    
T  2515841 tgatcatttaaagattcaggttgacaaacaatatgggtgatggaatttaacttatatagaaaat 2515904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 12293313 - 12293192
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    ||||||||||||||||||   | |||||  |||||||||  ||||| ||||||| |||||||||||||  | | ||||||||| | ||  ||||||||||    
T  12293313 aggcttaattgcatgtttagccccttat-atttattttaaattttaggttggtcacttatgttttaaacattttaagttggtcctatatattttaaaagt 12293215  T
Q  232 ttcaagttggtccaaaacgttac 254  Q
    |||| ||||||||||||| ||||    
T  12293214 ttcatgttggtccaaaacattac 12293192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 343
Target Start/End: Complemental strand, 43913755 - 43913594
Alignment:
Q  187 cttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    ||||||||||| |||| | ||| | ||| |||||||||| ||| ||||||||||||||||||  |||  | | || ||||||||||||| ||||  ||||    
T  43913755 cttatgttttagaagttttaagctagtcctttacgttttcaaaatttcaagttggtccaaaatattattcacgttagaataagttagtcccttcaatcac 43913656  T
Q  287 -----gtttaaagatttggattgacaatatgggtgatagaacttaacttatatagaaaatca 343  Q
         |||||| |||| ||  ||| ||||| |||||| ||||||||||||| ||||||||||    
T  43913655 ttaatgtttaatgattcgggatgataatataggtgatcgaacttaacttatttagaaaatca 43913594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 4592404 - 4592452
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagtt 210  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  4592404 tttaatttaggttttaagttggtcccttatgttttaaaagtttcaagtt 4592452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 16398941 - 16398991
Alignment:
Q  163 ttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggt 213  Q
    ||||||||| ||||||||||||||||| |||||||||||| | ||||||||    
T  16398941 ttattttaggttttaagttggtcccttttgttttaaaagttttaagttggt 16398991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 31143815 - 31143734
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggt 213  Q
    |||||||||||||||||||| || ||  ||||| ||||||| ||| | |||| ||||||||||||||||||| | ||||||||    
T  31143815 aaggcttaattgcatgtttggtccctggtgttt-attttaggtttcatgttgatcccttatgttttaaaagttttaagttggt 31143734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 24671978 - 24672031
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtca 215  Q
    |||||||||| |||||||||| ||  ||||||||||||||| ||||||||||||    
T  24671978 tttattttagattttaagttgatcatttatgttttaaaagtttcaagttggtca 24672031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 45170872 - 45170819
Alignment:
Q  221 gttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagt 274  Q
    ||||||||||||| |||||||||||||||||||| | | ||||||||| |||||    
T  45170872 gttttaaaagttttaagttggtccaaaacgttactcacgttggaataaattagt 45170819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 20871173 - 20871109
Alignment:
Q  207 agttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagtt 271  Q
    |||||||| |||| ||||||||||||||||||||||  |||||||| | | | ||||||||||||    
T  20871173 agttggtcctttatgttttaaaagtttcaagttggtttaaaacgttgctcacgttggaataagtt 20871109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 24671993 - 24672040
Alignment:
Q  206 aagttggtcatttacgttttaaaagtttcaagttggtccaaaacgtta 253  Q
    |||||| ||||||| ||||||||||||||||||||||| |||| ||||    
T  24671993 aagttgatcatttatgttttaaaagtttcaagttggtcaaaaatgtta 24672040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 43913780 - 43913745
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgtttta 165  Q
    |||| |||||||||||||||||||||||||||||||    
T  43913780 aaagacttaattgcatgtttgatctcttatgtttta 43913745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 5665817 - 5665735
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    ||||||| |||  ||| ||||||| | |||||| ||||| ||||||||||| | | ||| |||||||||||| ||||||||||    
T  5665817 tcaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcac 5665735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 40426094 - 40426143
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttac 254  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||||| ||||    
T  40426094 tcaagttggtc-tttatgttttaaaagttttaagttggtccaaaacattac 40426143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 20870893 - 20870930
Alignment:
Q  173 ttttaagttggtcccttatgttttaaaagtctcaagtt 210  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  20870893 ttttaagttggtcccttacgttttaaaagtttcaagtt 20870930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 21376114 - 21376155
Alignment:
Q  172 tttttaagttggtcccttatgttttaaaagtctcaagttggt 213  Q
    ||||||||||| |||||||| |||||||||| ||||||||||    
T  21376114 tttttaagttgatcccttatattttaaaagtttcaagttggt 21376155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 12714776 - 12714868
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttac 254  Q
    ||||||| | ||||||||||||||  ||||| ||||| ||| | || ||| ||  ||| ||||||||||||| ||||||||  ||||||||||    
T  12714776 tttatttgaatttttaagttggtcatttatggtttaagagttttaaattgatctcttatgttttaaaagttttaagttggtttaaaacgttac 12714868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 21376451 - 21376378
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttag---tttttaagttggtcccttatgttttaaaagt 202  Q
    |||||||| ||||| |||| ||| ||||||||| |||||||   |||| |||||||||||| |||||||||||||    
T  21376451 aaggcttatttgcaagtttaatcccttatgttt-attttaggtattttcaagttggtccctcatgttttaaaagt 21376378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 131 - 351
Target Start/End: Original strand, 33459891 - 33460115
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  33459891 aaggcttaattgcatgcttgatcccttatgttt-attttagttttcaagttagtcccttatgttttaaaagtttcaagttggtcctttacgttttaaaag 33459989  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgatagaactt 325  Q
    |||||||||||||||||| ||||| | | ||  ||||| |||||| ||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  33459990 tttcaagttggtccaaaatgttacgcacgttataataaattagtcccttccgtcacttaacgtttaaagatttggattgacaatatgggtgatagaactt 33460089  T
Q  326 aacttatatagaaaatcaatttaaaa 351  Q
    ||||||| |||||||||| |||||||    
T  33460090 aacttatttagaaaatcagtttaaaa 33460115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 347
Target Start/End: Original strand, 19987330 - 19987550
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||||||||| ||| ||||||||||||||| | |||||||||  ||| ||||||||||    
T  19987330 aaggcttaattgcatgtttgatcccatatgttt-attttagtttttaagttgttcctttatgttttaaaagttttaagttggtcccttaagttttaaaag 19987428  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgatagaactt 325  Q
    |||||||||| ||||||||||||| | | |||||||||||||||| |||| |||     ||||||||||||| || | ||| |||||||||||  || ||    
T  19987429 tttcaagttgatccaaaacgttactcacattggaataagttagtcccttcagtcatttaacgtttaaagattcgggtcgactatatgggtgatgaaattt 19987528  T
Q  326 aacttatatagaaaatcaattt 347  Q
    ||||||| ||||||||||||||    
T  19987529 aacttatttagaaaatcaattt 19987550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 135 - 343
Target Start/End: Original strand, 37245637 - 37245840
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||| ||  |||| ||||||||||||     
T  37245637 cttaattgcatatttgatcccttatgttt-attttagtttttaagttggtctcttatattttaaaagtttcaagttgatcccttacattttaaaagtttt 37245735  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcacgtttaaagatttggattgacaatatgggtgatagaacttaacttatat 334  Q
    |||||||||||||||||||| | | |||||||||| ||||| ||    | |||||||| |||| || |||||||||||||| ||  |||||||||||| |    
T  37245736 aagttggtccaaaacgttactcacgttggaataagctagtcact----taacgtttaaggattcgggttgacaatatgggtaatgaaacttaacttattt 37245831  T
Q  335 agaaaatca 343  Q
    |||||||||    
T  37245832 agaaaatca 37245840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 131 - 343
Target Start/End: Original strand, 42604626 - 42604842
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| | |||| |||||||||| |||||||||||  ||  ||||||||||    
T  42604626 aaggcttaattgcatgtttgatcccttatgttt-attttagttttcaagttggtactttatattttaaaagtttcaagttggtccctttagttttaaaag 42604724  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgatagaactt 325  Q
    ||||||||||||| |||||||||| | | |||||||||||||||  ||||  ||     ||||||||||||| || |||||||||||||||||  |||||    
T  42604725 tttcaagttggtctaaaacgttactcacgttggaataagttagttccttcaatcatttaacgtttaaagattagggttgacaatatgggtgatgaaactt 42604824  T
Q  326 aacttatatagaaaatca 343  Q
    |  |||| ||||||||||    
T  42604825 attttatttagaaaatca 42604842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 131 - 286
Target Start/End: Complemental strand, 8718613 - 8718459
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    ||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||| |||||||||| ||||||| |||  ||| |||||||||     
T  8718613 aaggcttaattgcatgtttgatcccatatgttt-attttaggttttaagttggtcccttattttttaaaagtttcaagtttgtcccttatgttttaaaat 8718515  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    |||||||||||| ||||||||||| | | ||||||||||||||||||||| |||||    
T  8718514 tttcaagttggttcaaaacgttactcacattggaataagttagtctcttctgtcac 8718459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 31873013 - 31872879
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||    
T  31873013 ggcttaattgcatatttgatcccttatgttt-attttagttttcaagttggtccct-atgttttaaaagtttcaagttggtcccttacgttttaaaagtt 31872916  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataag 269  Q
    |||||||||||||||||||||| | | ||||||||||    
T  31872915 tcaagttggtccaaaacgttactcacgttggaataag 31872879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 34518358 - 34518155
Alignment:
Q  144 atgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtc 243  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||| |||||||||| | || ||||||  ||||||||||||| |||||||||||||    
T  34518358 atgtttgatcccttatgttt-attttagtttttaagttggtcctttatattttaaaagttttaaattggtcccttacgttttaaaaatttcaagttggtc 34518260  T
Q  244 caaaacgttacccgccttggaataagttagtctcttccgtcac-----gtttaaagatttggattgacaatatgggtgatagaacttaacttatatagaa 338  Q
    ||||||||||| | | || ||||||||||||| || |  ||||     ||||||| ||| || |||||||||||||||||  |||||||||||| |||||    
T  34518259 caaaacgttactcacgttagaataagttagtccctccattcacttaatgtttaaatattcgggttgacaatatgggtgatgaaacttaacttatttagaa 34518160  T
Q  339 aatca 343  Q
    |||||    
T  34518159 aatca 34518155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 131 - 282
Target Start/End: Original strand, 35795309 - 35795459
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||  ||||||||||| || ||||||||  |||||||||||| |    
T  35795309 aaggcttaattgcatgtttgatctcttatgttt-attttagatttcaagttggtcccttgagttttaaaagtttcgagttggtcccttacgttttaaagg 35795407  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccg 282  Q
    ||||||| |||||||||||||||||| | || ||||||| ||||| ||||||    
T  35795408 tttcaaggtggtccaaaacgttacccacgtttgaataagctagtcccttccg 35795459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 135 - 343
Target Start/End: Complemental strand, 48171849 - 48171636
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||||||||||||| || ||||||||| ||||||| ||| |||||||||| ||||||||||||||| ||||| || ||  ||| ||||||||||||||    
T  48171849 cttaattgcatgtttggtcccttatgttt-attttaggtttcaagttggtcctttatgttttaaaagtttcaagctgttcccttatgttttaaaagtttc 48171751  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatgggtgatagaacttaac 328  Q
    |||||||| ||||||||||| | | || ||||||||||||| |||||||||      ||| ||||||||| | || ||||| |||||||| ||| |||||    
T  48171750 aagttggttcaaaacgttactcacatttgaataagttagtcccttccgtcactagaccgtataaagatttaggttaacaatgtgggtgatggaatttaac 48171651  T
Q  329 ttatatagaaaatca 343  Q
    |||| ||||||||||    
T  48171650 ttatttagaaaatca 48171636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 280
Target Start/End: Complemental strand, 143226 - 143082
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||||| |||||||||| ||||||||| ||||||| ||||||||||||||  |||| ||||||||| | |||||||||  ||||||||||||||||||    
T  143226 cttaattgtatgtttgatcccttatgttt-attttaggttttaagttggtcctatatgctttaaaagttttaagttggtcccttacgttttaaaagtttc 143128  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
    |||||||||||||||||||| | | ||| |||||||||||||||||    
T  143127 aagttggtccaaaacgttactcacgttgcaataagttagtctcttc 143082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 275
Target Start/End: Complemental strand, 33460297 - 33460164
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||  ||||||||||||||||       
T  33460297 ttaattgcatgtttgatctcttatgttt-attttagttttcaagttggtcccttatgttttaaaagtttcaagttgatcccttacgttttaaaagtt--- 33460202  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtc 275  Q
      ||||||||||||||||| | | ||||||||||||||||    
T  33460201 --ttggtccaaaacgttactcacgttggaataagttagtc 33460164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 3072973 - 3073122
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    ||||| ||||||||||||||||||  |||||||| ||||||| ||||||||||||||||| |||||||||||| | |||||||||  |||||||||||||    
T  3072973 aaaggtttaattgcatgtttgatcctttatgttt-attttagattttaagttggtcccttgtgttttaaaagttttaagttggtctcttacgttttaaaa 3073071  T
Q  230 gtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
    |||||||||||||| |||| ||||  | | |||||||||||||||| ||||    
T  3073072 gtttcaagttggtctaaaatgttattcacgttggaataagttagtcccttc 3073122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 271
Target Start/End: Complemental strand, 42605044 - 42604907
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||| ||||||||||| |||||||||||  ||||||||| ||||||    
T  42605044 ggcttaattgcatgtttgatcccttatgttt-attttagttttcaagttggacccttaggttttaaaagtttcaagttggtcccttacgtttttaaagtt 42604946  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagtt 271  Q
    ||| ||||||| |||||||||| | | || |||||||||    
T  42604945 tcatgttggtcaaaaacgttactcacatttgaataagtt 42604907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 135 - 341
Target Start/End: Complemental strand, 35795729 - 35795518
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||||||||||||| ||  |||||||| ||||||| |||||||||||||||| ||||||||||||| | || ||||||  ||| ||||||||||||||    
T  35795729 cttaattgcatgtttggtcctttatgttt-attttagattttaagttggtccctgatgttttaaaagttttaaattggtcccttatgttttaaaagtttc 35795631  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac------gtttaaagatttggattgacaatatgggtgatagaacttaac 328  Q
    |||||||| ||||||||||| | | |  ||||||||||||||||||| ||||      ||||||||||| |  ||||||| ||| |||||  || |||||    
T  35795630 aagttggttcaaaacgttactcacataagaataagttagtctcttccatcacttggttgtttaaagattcgagttgacaacatgagtgatgaaatttaac 35795531  T
Q  329 ttatatagaaaat 341  Q
    |||| ||||||||    
T  35795530 ttatttagaaaat 35795518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 14420192 - 14420046
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||||||||||  ||||||||| ||||||| |||||| || |||  ||||||||||||||| |||||||  ||| ||| ||||||||  ||||    
T  14420192 cttaattgcatgtttgattccttatgttt-attttaggttttaaattagtctattatgttttaaaagtttcaagttaatcaattatgttttaaagatttc 14420094  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttccg 282  Q
    |||||||||||||||||||| | | |||||||||||||||||||||||    
T  14420093 aagttggtccaaaacgttactcacgttggaataagttagtctcttccg 14420046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 18519315 - 18519463
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||  ||  ||||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||  ||||||||||||| ||    
T  18519315 ggcttaattgcatgttcaataccttatgttt-attttagtttttaagttggtcccttatgttttaaatgttttaagttggtcccttacgttttaaaaatt 18519413  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtctcttccg 282  Q
    |||||||| |  |||||||||| | | ||| |||||||||||| ||||||    
T  18519414 tcaagttgatataaaacgttactcactttgaaataagttagtcccttccg 18519463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 275
Target Start/End: Original strand, 34517959 - 34518103
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||| |||| | ||||   ||||||||||||    
T  34517959 aaaggtttaattgcatgtttgatcccttatgttt-attttagtttttaagttggtccattatgttttaacagtttcaactcggtcccctacgttttaaaa 34518057  T
Q  230 gtttcaagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    |||| |||||||| ||||||||||| | | ||| | ||||||||||    
T  34518058 gttttaagttggttcaaaacgttactcacattgaattaagttagtc 34518103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 136 - 280
Target Start/End: Complemental strand, 22792689 - 22792546
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    ||||||| ||||||| || | ||||||| ||||||| |||||||||||||||||| ||||||||||| | |||||||||  |||||||| ||| ||||||    
T  22792689 ttaattgtatgtttggtcccatatgttt-attttaggttttaagttggtcccttaagttttaaaagttttaagttggtcccttacgtttgaaaggtttca 22792591  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
    |||| |||||||||||||| | | |||||||||||||||| ||||    
T  22792590 agttagtccaaaacgttactcacattggaataagttagtcgcttc 22792546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 135 - 341
Target Start/End: Original strand, 22792290 - 22792501
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||| |||| || | ||||||| ||||||  ||||||||||||||||| |||||||||||| | |||||||||  ||| ||||||||||||||    
T  22792290 cttaattgcatatttggtcccatatgttt-attttaagttttaagttggtcccttttgttttaaaagttttaagttggtccgttatgttttaaaagtttc 22792388  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatgggtgatagaacttaac 328  Q
    | |||| | ||||||||||| |   ||| |||||||||||  |||||||||      ||||||||| ||  | ||||||||||||||||| ||| |||||    
T  22792389 atgttgattcaaaacgttactcatattgaaataagttagtaccttccgtcacttggccgtttaaagtttcaggttgacaatatgggtgatggaatttaac 22792488  T
Q  329 ttatatagaaaat 341  Q
    |||| ||||||||    
T  22792489 ttatttagaaaat 22792501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 274
Target Start/End: Complemental strand, 3075326 - 3075195
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||||||| |||||||||   ||||||||| |||||        ||||||||||||| |||||||||||  ||||||||||||||||    
T  3075326 ggcttaattgcatgtttgatcccttatgttta--tttagttttcaagtt--------atgttttaaaagtttcaagttggtccattacgttttaaaagtt 3075237  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagt 274  Q
    ||||||| |||||||||||||| | | |||||||||||||||    
T  3075236 tcaagtttgtccaaaacgttactcacattggaataagttagt 3075195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 343
Target Start/End: Original strand, 142811 - 143024
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||||||||||||  || ||||||| | ||||||| ||||||||||||||||| |||||||||| | |||||||||||  ||| ||||||||||||||    
T  142811 cttaattgcatgttttgtcccttatgtgt-attttaggttttaagttggtcccttgtgttttaaaattttcaagttggtcccttatgttttaaaagtttc 142909  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac------gtttaaagatttggattgacaatatgggtgatagaacttaac 328  Q
    || || ||  ||||||||||   | ||||| |||||||||| ||||  ||||      ||||||||||| || |||| ||||||| ||||  || |||||    
T  142910 aaatttgtttaaaacgttacttacattggagtaagttagtcccttctatcacttgactgtttaaagattcgggttgaaaatatggatgatgaaatttaac 143009  T
Q  329 ttatatagaaaatca 343  Q
    |||| ||||||||||    
T  143010 ttatttagaaaatca 143024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 48171442 - 48171573
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||||||||||| ||||||||| ||||||| ||| | |||||||||||||||||||||||| |||||||||||  ||||||        ||||    
T  48171442 cttaattgcatgtttgatcccttatgttt-attttaggtttcaggttggtcccttatgttttaaaagtttcaagttggtcccttacgt--------tttc 48171532  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    |||||  ||||||||||||| | | ||||||||||||||||    
T  48171533 aagttaatccaaaacgttactcacgttggaataagttagtc 48171573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 31872709 - 31872786
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  31872709 ttaattgcatgtttgatcccttatgttt-attttagttttaaagttggtcccttacgttttaaaagtttcaagttggtc 31872786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 19987746 - 19987601
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||||||| |||  |||||||| ||||||||||| |||||||| |||| |||||||||||| | |  ||||||  | || ||||||||||||     
T  19987746 cttaattgcatgtttaatcctttatgttt-attttagttttcaagttggttccttgtgttttaaaagttttattttggtccctcacattttaaaagtttt 19987648  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    |||||| |||||||||||||   | ||| ||||||||| ||||||||    
T  19987647 aagttgatccaaaacgttacttacattgtaataagttaatctcttcc 19987601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 13189179 - 13189292
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||||| |||| |||||||||||||| |||||||||| | ||||||||  ||||  |||||||||| || ||||||| ||||||||||| |||  |    
T  13189179 tttattttaggttttcagttggtcccttatattttaaaagttttaagttggtgctttatattttaaaagtatcgagttggttcaaaacgttactcgcaat 13189278  T
Q  262 ggaataagttagtc 275  Q
    | ||||||||||||    
T  13189279 gaaataagttagtc 13189292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 330
Target Start/End: Complemental strand, 18519663 - 18519533
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccg----tcacgtttaaagatttg 299  Q
    |||||||||||   ||||||||||||||||||||||| || |||||||||| | | ||||||||||||||||||||| |    | |  |||||||||| |    
T  18519663 tcaagttggtctcatacgttttaaaagtttcaagttgatctaaaacgttactcacgttggaataagttagtctcttctgctacttaaatttaaagattcg 18519564  T
Q  300 gattgacaatatgggtgatagaacttaactt 330  Q
    | |||||||||||||||||  ||||||||||    
T  18519563 ggttgacaatatgggtgatgtaacttaactt 18519533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 18519701 - 18519627
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttg 211  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| | || ||||||||||| ||||||||    
T  18519701 ttaattgcatgtttgatctcttatgttt-attttagttttcaagttggtctcatacgttttaaaagtttcaagttg 18519627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 31872749 - 31872818
Alignment:
Q  206 aagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||    
T  31872749 aagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattgaaataagttagtc 31872818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 343
Target Start/End: Original strand, 25622664 - 25622792
Alignment:
Q  221 gttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatggg 314  Q
    ||||| |||||||||||||||| ||||||||||| | | |||||||||||||||||||||  |||      || ||||||| | || || ||||||||||    
T  25622664 gttttgaaagtttcaagttggttcaaaacgttactcacattggaataagttagtctcttctctcacttgaccggttaaagaatcgggtttacaatatggg 25622763  T
Q  315 tgatagaacttaacttatatagaaaatca 343  Q
    |||| ||| ||| ||||| ||||||||||    
T  25622764 tgatggaatttatcttatttagaaaatca 25622792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 37245983 - 37245932
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtc 185  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  37245983 ggcttaattgcatgtttgatcccttatg-tttattttagtttttaagttggtc 37245932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 14419846 - 14419886
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagt 202  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  14419846 tttattttaggttttaagttggtcccttatgttttaaaagt 14419886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 25622602 - 25622685
Alignment:
Q  129 aaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggt 213  Q
    |||||||||||||||||||||  || |||||| |||||||||| ||| || || ||| |||||||||| ||||| ||||||||||    
T  25622602 aaaaggcttaattgcatgtttagtcccttatg-tttattttaggtttcaaattagtctcttatgttttgaaagtttcaagttggt 25622685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 8718402 - 8718456
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtc 185  Q
    ||||||||||||||||||||| |||||| || |||||||||| |||||||||||||    
T  8718402 aaaggcttaattgcatgtttggtctcttgtg-tttattttaggttttaagttggtc 8718456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 36783489 - 36783415
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttg 211  Q
    ||||||| ||||||| |||||||||||  ||||||| |||||||||||||  ||||||||||||| | ||||||||    
T  36783489 ttaattgtatgtttggtctcttatgttc-attttagattttaagttggtcttttatgttttaaaaatttcaagttg 36783415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 14419883 - 14419934
Alignment:
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    |||||||| |||||| |||||| | | |||||||||||||||||||||||||    
T  14419883 aagttggttcaaaacattacccacgtcggaataagttagtctcttccgtcac 14419934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 440
Target Start/End: Complemental strand, 48171601 - 48171543
Alignment:
Q  382 attaaacttaatattatgtcgcgaaaatgactaatttattctaacgtgagtaacgtttt 440  Q
    |||||||| ||||| |||||||| ||  |||||| |||||| |||||||||||||||||    
T  48171601 attaaactcaatatcatgtcgcggaatggactaacttattccaacgtgagtaacgtttt 48171543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 30971849 - 30971926
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagtt 239  Q
    ||||||||||||||||||||| | | ||||||||||||||| | |||||  |   |||| |||||||||||| |||||    
T  30971849 tttattttagtttttaagttgtttctttatgttttaaaagttttaagttattaccttacattttaaaagttttaagtt 30971926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 132 - 347
Target Start/End: Complemental strand, 34439639 - 34439421
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| | ||||||||||||| |||||||||||  |||||||||||||||    
T  34439639 aggcttaattgcatgtttgatcccttatgttt-attttagtttttaaattggtccttcatgttttaaaagtttcaagttggtcccttacgttttaaaagt 34439541  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac----gtttaaagatttggattgacaatatgggtgatagaacttaa 327  Q
    || |||||||||||||||||||| | | ||||| |||||||||||||||||||||     |||||||||   | ||||||||||||||||| ||||||||    
T  34439540 ttaaagttggtccaaaacgttactcacgttggattaagttagtctcttccgtcacttaaatttaaagatccagtttgacaatatgggtgatggaacttaa 34439441  T
Q  328 cttatatagaaaatcaattt 347  Q
    ||||| || |||||||||||    
T  34439440 cttatttaaaaaatcaattt 34439421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 136 - 340
Target Start/End: Complemental strand, 16049889 - 16049683
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||| ||  |||||||||||||||||||    
T  16049889 ttaattgcatgtttgatcccttatgttt-attttagttttcaagttggtcccttatgttttaaaagttttaagttgatc--ttacgttttaaaagtttca 16049793  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac-----gtttaaagatttggattgacaatatgggtgatagaacttaactt 330  Q
    ||||||||||||| ||||| | | ||||||||| ||||||| ||  |||||     |||| |||||| || |||||||||||| |||| |||||||||||    
T  16049792 agttggtccaaaatgttactcacgttggaataaattagtctatttagtcacttaatgttttaagattcgggttgacaatatggatgatggaacttaactt 16049693  T
Q  331 atatagaaaa 340  Q
    || |||||||    
T  16049692 atttagaaaa 16049683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 9710216 - 9710334
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||  |||| |||||||||||||    
T  9710216 cttaattgcatgtttgatcccttatgttt-attttagtttttaagttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaagtttc 9710314  T
Q  235 aagttggtccaaaacgttac 254  Q
    ||||||||||||||||||||    
T  9710315 aagttggtccaaaacgttac 9710334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 127 - 282
Target Start/End: Original strand, 4623061 - 4623215
Alignment:
Q  127 aaaaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgtttta 226  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||| | |||||||||  ||||||||||    
T  4623061 aaaaaagacttaattgcatgtttgatcccttatgttt-attttagtttttaaattgatcccttatgttttaaaagttttaagttggtctcttacgtttta 4623159  T
Q  227 aaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccg 282  Q
    || ||||||||||||||||||| ||||| | | ||| |||||||||||| ||||||    
T  4623160 aaggtttcaagttggtccaaaatgttactcacattgaaataagttagtcccttccg 4623215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 127 - 282
Target Start/End: Original strand, 7644772 - 7644925
Alignment:
Q  127 aaaaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgtttta 226  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||  ||||||||||    
T  7644772 aaaaaaggcttaattgcatgtttgatc-cttatgttt-attttagtttttaagttggtcccttatgttttaaaagtttcaagttgatcccttacgtttta 7644869  T
Q  227 aaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccg 282  Q
    ||| ||| |||||||||| |||| |||| |   |||||||||||||||| ||||||    
T  7644870 aaaattttaagttggtccgaaacattactcagattggaataagttagtcccttccg 7644925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 131 - 282
Target Start/End: Original strand, 25879564 - 25879713
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||| | || ||||||| ||||||||||| ||    
T  25879564 aaggcttaattgcatgtttgatct-ttatgttt-atttttgtttttaagttggtccattatgttttaaaagttttaaattggtcacttacgttttaatag 25879661  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccg 282  Q
    ||||||||| || ||||||||||||| | |||||||||||||||| ||||||    
T  25879662 tttcaagttagttcaaaacgttacccacgttggaataagttagtcccttccg 25879713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 132 - 281
Target Start/End: Original strand, 34439219 - 34439367
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||  |||||||||||  ||||||||||||||     
T  34439219 aggcttaattgtatgtttgatctcttatgttt-attttagtttttaagttggttcgttaggttttaaaagattcaagttggtcccttacgttttaaaaga 34439317  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    ||||||||||||||||||||||  | | ||| ||||||||||||||||||    
T  34439318 ttcaagttggtccaaaacgttattcacgttgcaataagttagtctcttcc 34439367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 16049480 - 16049619
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||||||||||| |||| | ||||||| ||||| |||||||| ||||| ||||||||||||||||| | |||||||||  || |||||||||| ||||    
T  16049480 cttaattgcatgttcgatcccgtatgttt-attttggtttttaatttggttccttatgttttaaaagttttaagttggtccctttcgttttaaaaatttc 16049578  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  16049579 aagttggtccaaaacgttacccacattggaataagttagtc 16049619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 34687755 - 34687893
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||| | ||||||||| ||||||| |||||||||||| | ||||||||||||| | |||||||||||  ||| |||||||||||||||    
T  34687755 ttaattgcatgtttgaccccttatgttt-attttaggttttaagttggttctttatgttttaaaaatttcaagttggtcccttatgttttaaaagtttca 34687853  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    ||||||||||||||||||| | | || |||||||||||||    
T  34687854 agttggtccaaaacgttactcactttagaataagttagtc 34687893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 135 - 343
Target Start/End: Complemental strand, 7645196 - 7644986
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||||| |||| |||| |||||||||| |||||||| ||  |||| |||||||||||||    
T  7645196 cttaatcgcatgtttgatcccttatgttt-attttagtttttaagttagtcctttatattttaaaagtttcaagttgatcccttacattttaaaagtttc 7645098  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgatagaacttaact 329  Q
    |||||| ||||||||||||| | | ||| ||||||||||   || | |||     ||||||||||||| |||||||||| ||  |||||  |||||||||    
T  7645097 aagttgatccaaaacgttactcacgttgcaataagttaggacctccagtcacttaacgtttaaagattcggattgacaacat--gtgatgaaacttaact 7645000  T
Q  330 tatatagaaaatca 343  Q
    ||| ||||||||||    
T  7644999 tatttagaaaatca 7644986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 18935457 - 18935323
Alignment:
Q  139 attgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagt 238  Q
    |||||||||||| || ||||||||| ||||||| ||| | |||||||||||||||||||||||| |||||||||||  ||  ||||||||||||||||||    
T  18935457 attgcatgtttggtcccttatgttt-attttaggtttcatgttggtcccttatgttttaaaagtttcaagttggtctcttgtgttttaaaagtttcaagt 18935359  T
Q  239 tggtccaaaacgttacccgccttggaataagttagt 274  Q
    |||||| |||||||||   | |||||||||||||||    
T  18935358 tggtcccaaacgttactttcattggaataagttagt 18935323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 4623515 - 4623406
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||| ||||||||||||||| ||||| | |||| ||| ||||||||||||    
T  4623515 ggcttaattgcatgtttgatcccttatgttt-attttagttttcaagttgatcctttatgttttaaaagtttcaagatagtcacttatgttttaaaagtt 4623417  T
Q  233 tcaagttggtc 243  Q
    |||||||||||    
T  4623416 tcaagttggtc 4623406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 187 - 347
Target Start/End: Complemental strand, 4623433 - 4623269
Alignment:
Q  187 cttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-- 284  Q
    |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||| ||   | | ||| |||||||||||| |||| |||      
T  4623433 cttatgttttaaaagtttcaagttggtcacttatgttttaaaagtttcaagttggtcaaaaacatt-ttcacgttgaaataagttagtcccttcagtcac 4623335  T
Q  285 ---acgtttaaagatttggattgacaatatgggtgatagaacttaacttatatagaaaatcaattt 347  Q
       ||||||||||||||||||| ||||| ||||||||  |||||||||||| ||||||| ||||||    
T  4623334 ttaacgtttaaagatttggatttacaatgtgggtgatgaaacttaacttatttagaaaaccaattt 4623269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 18429440 - 18429520
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||||    
T  18429440 ggcttaattgcatgtttgatctcttatgttt-attttagttttcaagttggtcccttatattttaaaagtttcaagttggtc 18429520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 18429738 - 18429618
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||| ||||||||||| |||||||||   ||||||||| || ||||||  | ||||||||||||| | |||||||||  |||||||||||||||    
T  18429738 aggcttaatttcatgtttgatcccttatgttta--tttagttttcaaattggtctttcatgttttaaaagtttaaagttggtcccttacgttttaaaagt 18429641  T
Q  232 ttcaagttggtccaaaacgttac 254  Q
    || ||||||||||||||||||||    
T  18429640 tttaagttggtccaaaacgttac 18429618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 18548539 - 18548677
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||  ||||||||| ||||||| |||||||||||| | ||||||||||||||| | ||||||||   |||||||||||| |||| |    
T  18548539 ttaattgcatgtttgattccttatgttt-attttaggttttaagttggtactttatgttttaaaagttttaagttggtttcttacgttttaaaggtttta 18548637  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    |||||||||||||| |||| |   ||| ||||||||||||    
T  18548638 agttggtccaaaacattactcaagttgaaataagttagtc 18548677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 271
Target Start/End: Original strand, 18935050 - 18935188
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    ||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||||| |||||||||| | | |||||||||  ||| ||| |||||||    
T  18935050 aggcttaattgcatgtttggtctcttatgttt-attttaagttttaagttggtcccttttgttttaaaacttttaagttggtcccttatgttataaaagt 18935148  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagtt 271  Q
    ||||| ||||| ||||| ||||| | ||||| || |||||    
T  18935149 ttcaaattggttcaaaatgttactcaccttgaaacaagtt 18935188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 7535674 - 7535527
Alignment:
Q  127 aaaaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgtttta 226  Q
    |||| ||| |||||||||||||||||  ||||| ||| ||||| | ||| ||||||| |||||||||||||||||  |||||||||||  |||| |||||    
T  7535674 aaaataggtttaattgcatgtttgattccttatattt-atttttggtttcaagttggccccttatgttttaaaagattcaagttggtcccttacatttta 7535576  T
Q  227 aaagtttcaagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
     | |||| |||||||||||||||||||| | | ||| ||||||||||||    
T  7535575 caggttttaagttggtccaaaacgttactcacgttgaaataagttagtc 7535527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 135 - 274
Target Start/End: Original strand, 21445985 - 21446121
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||||||||||||| || ||||| ||| ||||||| |||||||||||||||||| ||||||||||| |   |||||||  |||||||||||| |||||    
T  21445985 cttaattgcatgtttggtcccttatattt-attttagattttaagttggtcccttacgttttaaaagttt--tgttggtctcttacgttttaaaggtttc 21446081  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagt 274  Q
    |||||| | ||||| ||||| | | || ||||||||||||    
T  21446082 aagttgtttcaaaatgttactcacattagaataagttagt 21446121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 343
Target Start/End: Complemental strand, 18548920 - 18548736
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||||| ||||||||||||| ||||| |||||||||| |  |||| |||  ||||||||| |||||| ||| ||||| || |||||| | |   ||    
T  18548920 tttattttaggttttaagttggtctcttatattttaaaagttttgagtttgtctcttacgttttcaaagttgcaaattggttcacaacgttgctcaaatt 18548821  T
Q  262 ggaataagttagtctcttccgtc------acgtttaaagatttggattgacaatatgggtgatagaacttaacttatatagaaaatca 343  Q
    |||||||||||||||||||| ||      ||||||||||||| |   ||||||| | |||||| ||| ||||||||| ||||||||||    
T  18548820 ggaataagttagtctcttccatcacttaaacgtttaaagattcg---tgacaatctaggtgatggaatttaacttatttagaaaatca 18548736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 25879941 - 25879817
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||||| ||| ||||| ||  ||| ||| |||||||| |||||||||||  |||  ||||||||||||||||||||| ||||| |||||     ||    
T  25879941 tttattttagatttgaagttagtgtcttgtgtcttaaaagtttcaagttggtcccttatattttaaaagtttcaagttggttcaaaatgttacatatatt 25879842  T
Q  262 ggaataagttagtctcttccgtcac 286  Q
    |||||||||||||| |||| |||||    
T  25879841 ggaataagttagtcccttctgtcac 25879817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 7535297 - 7535362
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaa 198  Q
    ||||||||||||||||||| ||||||||| |||||||||  |||||||||||||  |||||||||||    
T  7535297 aggcttaattgcatgtttggtctcttatg-tttattttacgttttaagttggtcttttatgttttaa 7535362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 23871184 - 23871248
Alignment:
Q  222 ttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    ||||||| ||||||||||||||||||| ||||| ||| ||| |||||||||||| ||||| ||||    
T  23871184 ttttaaaggtttcaagttggtccaaaatgttactcgcgttgaaataagttagtcacttccatcac 23871248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 32665961 - 32665816
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||||||||||||  | |||||||||||| |||| || ||||||||||| || |||  ||| |||||| | || |||| |  ||| ||||||| ||||    
T  32665961 ggcttaattgcatgtgcggtctcttatgttt-atttcaggttttaagttggacctttacattt-aaaagttttaaattggacccttatgttttaagagtt 32665864  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    | ||||||||||||||| |||| ||  ||||||||||||||| ||||||    
T  32665863 ttaagttggtccaaaactttactcg-attggaataagttagtatcttcc 32665816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 18429481 - 18429558
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    |||||||||||  |||  |||||||||||||||||||||||||||  |||| | | || ||||||||||||| |||||    
T  18429481 tcaagttggtcccttatattttaaaagtttcaagttggtccaaaatattactcacgttagaataagttagtcccttcc 18429558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 4623414 - 4623376
Alignment:
Q  177 aagttggtcccttatgttttaaaagtctcaagttggtca 215  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  4623414 aagttggtcacttatgttttaaaagtttcaagttggtca 4623376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 23871002 - 23871078
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggt 213  Q
    |||||||| |||||| ||||||||||||  ||| |||||  ||||| ||||||||||| |||||| | ||||||||||    
T  23871002 ttaattgcttgtttggtctcttatgtttattttgagtttc-aagtttgtcccttatgtattaaaattttcaagttggt 23871078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 18429580 - 18429528
Alignment:
Q  382 attaaacttaatattatgtcgcgaaaatgactaatttattctaacgtgagtaa 434  Q
    |||||||| |||||||||||| | ||  |||||| ||||||||||||||||||    
T  18429580 attaaactcaatattatgtcgtggaagggactaacttattctaacgtgagtaa 18429528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 134 - 351
Target Start/End: Complemental strand, 29527007 - 29526786
Alignment:
Q  134 gcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagttt 233  Q
    ||||||||| |||||| ||| ||||||||| |||||| ||||||||||||||| ||||||||||||||| | |||||||||  |||||||||||||||||    
T  29527007 gcttaattgtatgtttaatcccttatgttt-attttaatttttaagttggtccattatgttttaaaagttttaagttggtcccttacgttttaaaagttt 29526909  T
Q  234 caagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcacgt-----ttaaagatttggattgacaatatgggtgatagaacttaac 328  Q
    ||||||||||||||||||||| | | ||||||||||||||||||||| |||||||     ||||||||  || ||||||||||||||||| |||||||||    
T  29526908 caagttggtccaaaacgttactcacgttggaataagttagtctcttcagtcacgtaacggttaaagatccgggttgacaatatgggtgatggaacttaac 29526809  T
Q  329 ttatatagaaaatcaatttaaaa 351  Q
    |||| |||||||| | |||||||    
T  29526808 ttatttagaaaattagtttaaaa 29526786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 127 - 347
Target Start/End: Complemental strand, 44995479 - 44995257
Alignment:
Q  127 aaaaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgtttta 226  Q
    |||| |||||||||||||| ||||| | |||| |||| |||||||||||||||||||| | | || |||||||||| |||||||||||  ||||||||||    
T  44995479 aaaataggcttaattgcat-tttgaccccttacgttt-attttagtttttaagttggtacttcatattttaaaagtttcaagttggtcccttacgtttta 44995382  T
Q  227 aaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac----gtttaaagatttggattgacaatatgggtgatagaa 322  Q
    ||||| |||||||||||||||||||||| | | |||||||||||||||||||||||||||     |||||||||| || |||||||||||| || | |||    
T  44995381 aaagtatcaagttggtccaaaacgttactcacgttggaataagttagtctcttccgtcacttaaatttaaagattcgggttgacaatatggatggtggaa 44995282  T
Q  323 cttaacttatatagaaaatcaattt 347  Q
    |||||||||| || |||||||||||    
T  44995281 cttaacttatttaaaaaatcaattt 44995257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 131 - 347
Target Start/End: Original strand, 13490170 - 13490390
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    |||||||||||||| || ||||||||||||||| | |||||||||||||||| ||| ||||||||||||||| | |||||||||  ||||||||||||||    
T  13490170 aaggcttaattgcaggtctgatctcttatgttt-actttagtttttaagttgatcctttatgttttaaaagttttaagttggtctcttacgttttaaaag 13490268  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtc-----acgtttaaagatttggattgacaatatgggtgatagaactt 325  Q
    ||| |||||||||||||||||||| | | |||||||||||||||| || | |||     ||||||||||||     |||||||||||||||||  |||||    
T  13490269 ttttaagttggtccaaaacgttactcacgttggaataagttagtccctccagtcacttaacgtttaaagatccatgttgacaatatgggtgatgaaactt 13490368  T
Q  326 aacttatatagaaaatcaattt 347  Q
    ||||||| ||||||||||||||    
T  13490369 aacttatttagaaaatcaattt 13490390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 132 - 351
Target Start/End: Original strand, 27956722 - 27956944
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| | ||||| | ||||||||||||| | || ||||||  |||||||||||||||    
T  27956722 aggcttaattgcatgtttgatcccttatgttt-attttagtttttaaataggtccttcatgttttaaaagttttaaattggtcccttacgttttaaaagt 27956820  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac----gtttaaagatttggattgacaatatgggtgatagaacttaa 327  Q
    |||||||||||||||||| |||||| | ||||||||||||||| ||||||| |||     |||||||||   | |||||||||||||| ||  |||||||    
T  27956821 ttcaagttggtccaaaacattacccacgttggaataagttagtttcttccgacacttaaatttaaagatccaggttgacaatatgggtaatgaaacttaa 27956920  T
Q  328 cttatatagaaaatcaatttaaaa 351  Q
    ||||| || ||||||| |||||||    
T  27956921 cttatttaaaaaatcagtttaaaa 27956944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 32622600 - 32622451
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||| | ||||||||| ||||||| |||||||||| |    
T  32622600 ttaattgcatgtttgatcccttatgttt-attttagtttttaagttggtccttcatgttttaaaagtttgaagttggtcttttacgtattaaaagtttta 32622502  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    ||||||||||||||||||| | | ||||||||||||| ||||  |||||||    
T  32622501 agttggtccaaaacgttactcacgttggaataagttaatctcccccgtcac 32622451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 136 - 281
Target Start/End: Original strand, 24015813 - 24015956
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||| ||| ||||||||| ||||||||||| |||||| ||||||||||||||||||| | ||||||||| |||||||||| ||| |||||    
T  24015813 ttaattgcatgttt-atcccttatgttt-attttagttttcaagttgatcccttatgttttaaaagttttaagttggtcctttacgttttgaaaatttca 24015910  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
     ||||||||||||| ||||   | ||| ||||||||||||||||||    
T  24015911 tgttggtccaaaacattactgacattgaaataagttagtctcttcc 24015956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 26845597 - 26845475
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacg-ttttaaaag 230  Q
    ||||| ||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| | |||||| ||    
T  26845597 aggctgaattgcatgtttggtcccttatgttt-attttaggttttaagttggtcccttatgttttaaaagtttcaagttggtcctttatgtttttaacag 26845499  T
Q  231 tttcaagttggtccaaaacgttac 254  Q
    ||||| |||||| |||||||||||    
T  26845498 tttcatgttggttcaaaacgttac 26845475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 29526596 - 29526713
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||||||||||| ||||  |||||||| ||||||||||| || |||||||||||||||| ||| || |||||||||||  ||||||||||||||||||    
T  29526596 cttaattgcatgttggatcctttatgttt-attttagttttcaatttggtcccttatgtttgaaa-gtttcaagttggtctcttacgttttaaaagtttc 29526693  T
Q  235 aagttggtccaaaacgttac 254  Q
    ||||||||||||||||||||    
T  29526694 aagttggtccaaaacgttac 29526713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 3217280 - 3217429
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    ||||||||||||||||||||| || ||| ||| | || |||| ||| | ||||||||||||||||||||| || |||||||||||  ||| |||||||||    
T  3217280 aaaggcttaattgcatgtttggtcccttgtgtat-atcttaggtttcatgttggtcccttatgttttaaaggtttcaagttggtccattatgttttaaaa 3217378  T
Q  230 gtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
     ||||||||||||| |||||||||| | | |||||||||||||||| ||||    
T  3217379 ttttcaagttggtctaaaacgttactcacgttggaataagttagtcccttc 3217429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 39060304 - 39060405
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||||  |||||| |||||||    
T  39060304 aaggcttaattgcatgtttgatcccttatgttt-attttagtttttaagttggtccctaatgttttaaaagttttaagttggtcccttacgtcttaaaag 39060402  T
Q  231 ttt 233  Q
    |||    
T  39060403 ttt 39060405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 13140288 - 13140400
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||| |||||||||||||  ||||||||| ||||||| |||||||||||||  ||||||||||||||| | |||||||||| |||||||||||| |||    
T  13140288 ggcttacttgcatgtttgatgccttatgttt-attttaggttttaagttggtcttttatgttttaaaagttttaagttggtcacttacgttttaaaggtt 13140386  T
Q  233 tcaagttggtccaa 246  Q
    ||||||||||||||    
T  13140387 tcaagttggtccaa 13140400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 136 - 343
Target Start/End: Complemental strand, 6795583 - 6795372
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||| | ||| ||| ||||||| |||||||||||||| ||||||||||||||| | |||||||||  | ||||||||||||||| |    
T  6795583 ttaattgcatgtttgatcccctatattt-attttaggttttaagttggtccattatgttttaaaagtttaaagttggtccctaacgttttaaaagtttaa 6795485  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatgggtgatagaacttaact 329  Q
    ||||||| ||||| |||||   | ||  |||||| |||||  ||||||||      |||| ||||||| || |||||||||||| |||| ||| ||||||    
T  6795484 agttggttcaaaatgttactaacattataataagatagtcctttccgtcacttaaccgttgaaagattcgg-ttgacaatatggatgatggaatttaact 6795386  T
Q  330 tatatagaaaatca 343  Q
    ||| ||||||||||    
T  6795385 tatttagaaaatca 6795372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 3221244 - 3221089
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    ||||||||||| ||||||||| ||  || ||| | || |||| ||| | |||||||||||||||||||||||| |||||||||||  ||| |||||||||    
T  3221244 aaaggcttaatagcatgtttggtccgttgtgtat-atcttagatttcatgttggtcccttatgttttaaaagtttcaagttggtccattatgttttaaaa 3221146  T
Q  230 gtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
     ||||||||||||| |||||||||| |   |||||||||||| ||| |||| |||||    
T  3221145 ttttcaagttggtctaaaacgttactcatgttggaataagtttgtcccttctgtcac 3221089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 27957126 - 27957015
Alignment:
Q  142 gcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttgg 241  Q
    |||||||||||||||||||||| ||||||| ||| |||| |||| ||||| |||||||||| | || ||||||  ||||| |||||| ||||||||||||    
T  27957126 gcatgtttgatctcttatgttt-attttaggtttcaagtaggtctcttatattttaaaagttttaacttggtccgttacgctttaaatgtttcaagttgg 27957028  T
Q  242 tccaaaacgttac 254  Q
    |||||||||||||    
T  27957027 tccaaaacgttac 27957015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 130 - 285
Target Start/End: Complemental strand, 15988666 - 15988513
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    ||||||||||||||| |||||    ||||||||| ||||| | ||| | |||||||| ||||||||||||||| |||||||||||  |||  ||||||||    
T  15988666 aaaggcttaattgcaggtttgggtccttatgttt-attttcggtttcatgttggtcc-ttatgttttaaaagtttcaagttggtcccttatattttaaaa 15988569  T
Q  230 gtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtca 285  Q
    |||| ||||||||||||||| |||| | | |||||||||||||||| ||| |||||    
T  15988568 gttttaagttggtccaaaacattactcacattggaataagttagtccctttcgtca 15988513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 13490583 - 13490474
Alignment:
Q  137 taattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaa 236  Q
    ||||||||||||||||| ||||| ||| ||||||||||| |||||  || |||||||||||||||  | |||||||||  ||||| ||||||||||||||    
T  13490583 taattgcatgtttgatcacttatattt-attttagttttcaagttactctcttatgttttaaaagatttaagttggtcccttacgctttaaaagtttcaa 13490485  T
Q  237 gttggtccaaa 247  Q
    |||||||||||    
T  13490484 gttggtccaaa 13490474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 14473916 - 14473796
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||||| ||| |||| ||||||||||||||||||||| | ||||||||   ||  ||||| | |||||||||||||||||||||||||| |   ||    
T  14473916 tttattttaggtttcaagtaggtcccttatgttttaaaagttttaagttggtgtcttttgttttgagagtttcaagttggtccaaaacgttactcatttt 14473817  T
Q  262 ggaataagttagtctcttccg 282  Q
    |||||||||||||| ||||||    
T  14473816 ggaataagttagtcccttccg 14473796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 32622214 - 32622293
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttg 211  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||| || |||||    
T  32622214 aaggcttaattgcatgtttgatcccttatgttt-attttagttttcaagttggtctcttatgttttaaaagtttccagttg 32622293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 1352830 - 1352971
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||||||  ||||||||| ||||||| |||||| |||||||||| | ||||| || | | |||||||||  |||| |||||||||||    
T  1352830 ggcttaattgcatgtttgattccttatgttt-attttaggttttaaattggtcccttgtattttacaaattttaagttggtctcttacattttaaaagtt 1352928  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    | ||||||||| |||| ||||  | | ||| ||||||||||||    
T  1352929 ttaagttggtctaaaatgttattcacgttgaaataagttagtc 1352971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 24065872 - 24065992
Alignment:
Q  134 gcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaag-ttggtcatttacgttttaaaagtt 232  Q
    ||||||||| |||||||||| ||| ||||| |||| || ||| || ||||||||||||||||||||||| ||||| |||  | |||| ||||||||||||    
T  24065872 gcttaattgaatgtttgatcccttgtgttt-atttgaggtttcaatttggtcccttatgttttaaaagtttcaagcttgtccttttatgttttaaaagtt 24065970  T
Q  233 tcaagttggtccaaaacgttac 254  Q
    ||||||||||| ||||| ||||    
T  24065971 tcaagttggtctaaaacattac 24065992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 1353214 - 1353137
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    ||||||| ||||||| ||||| |||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  1353214 ttaattgtatgtttggtctctcatgttt-attttaggttttaagttggtctcttatgttttaaaagtttcaagttggtc 1353137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 43971928 - 43971815
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||||||||||||||| || ||||||||| ||||||| ||| ||||||||| | | |||||||||||| |||||||||||  |   ||||||||||||    
T  43971928 ggcttaattgcatgtttggtcccttatgttt-attttaggtttcaagttggtcacatgtgttttaaaagtttcaagttggtccctagtgttttaaaagtt 43971830  T
Q  233 tcaagttggtccaaa 247  Q
    ||| |||||| ||||    
T  43971829 tcatgttggttcaaa 43971815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 43513973 - 43513826
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||| |||||||||||||| ||||||||| || |||| ||| ||||||||| ||||||| || ||||| | |||||| ||  |||||||||||   ||    
T  43513973 ggcttacttgcatgtttgatcccttatgttt-atattaggtttcaagttggtctcttatgtcttgaaagtttaaagttgatcccttacgttttaatgttt 43513875  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    |||||||||| ||||| ||||  | | ||| |||||||||||| |||||    
T  43513874 tcaagttggttcaaaatgttattcacgttgaaataagttagtcacttcc 43513826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 1353174 - 1353100
Alignment:
Q  206 aagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
    |||||||||  ||| |||||||||||||||||||||||||||| ||||| |  ||| ||||||||||||||||||    
T  1353174 aagttggtctcttatgttttaaaagtttcaagttggtccaaaatgttactcatcttagaataagttagtctcttc 1353100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 318
Target Start/End: Original strand, 6412463 - 6412651
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||||||||||||  | |||||||||||| |||| || ||||||||||| || |||  ||| |||||| | || |||| |  ||| ||||||| ||||    
T  6412463 ggcttaattgcatgtgcggtctcttatgttt-atttcaggttttaagttggacctttacattt-aaaagttttaaattggacccttatgttttaagagtt 6412560  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatgggtgat 318  Q
    ||||||||||||||||| |||  ||  ||||||||||||||| |||||| |||      |||||||| ||| ||||||||||||||| ||||    
T  6412561 tcaagttggtccaaaactttagtcg-attggaataagttagtatcttccttcacttaaccgtttaaatattcggattgacaatatggatgat 6412651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 13140677 - 13140598
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggt 213  Q
    |||||||||||||||||| || ||| ||||| ||||||| |||||||||||||  |||| |||||||||| ||||||||||    
T  13140677 ggcttaattgcatgtttggtcccttgtgttt-attttagattttaagttggtcatttatattttaaaagtttcaagttggt 13140598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 14473498 - 14473572
Alignment:
Q  127 aaaaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagt 202  Q
    |||| ||||||||||||||||||| || ||| ||||| ||||||  |||| |||||||||||||||||||||||||    
T  14473498 aaaataggcttaattgcatgtttggtcgcttttgttt-attttaagttttgagttggtcccttatgttttaaaagt 14473572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 37762415 - 37762315
Alignment:
Q  139 attgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagt 238  Q
    ||||||| ||||||||||||||||| ||||||||||| || || ||| |||||||||||||| | | || ||| ||  |||| ||||||| |||||||||    
T  37762415 attgcatatttgatctcttatgttt-attttagttttcaaattagtctcttatgttttaaaatttttaaattgatcccttacattttaaaggtttcaagt 37762317  T
Q  239 tg 240  Q
    ||    
T  37762316 tg 37762315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 24284186 - 24284062
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||||| ||  || ||||||||||||||||||||||| | ||||| | |  |||  |||||||||||||||||||  ||||||| |||| |  |||    
T  24284186 tttattttaggttacaaattggtcccttatgttttaaaagttttaagtttgactcttatattttaaaagtttcaagttgacccaaaacattactcatctt 24284087  T
Q  262 ggaataagttagtctcttccgtcac 286  Q
      |||||||||||  ||||||||||    
T  24284086 aaaataagttagttccttccgtcac 24284062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 6795185 - 6795247
Alignment:
Q  139 attgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagt 202  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||| | |||| ||||||||||    
T  6795185 attgtatgtttgatctcttatattt-attttagtttttaagttggttctttatattttaaaagt 6795247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 13140634 - 13140560
Alignment:
Q  206 aagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
    ||||||||||||||  ||||||||||||||||||||| ||| ||||||| | | ||  ||||||||||| |||||    
T  13140634 aagttggtcatttatattttaaaagtttcaagttggttcaatacgttactcacattataataagttagtttcttc 13140560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 32622257 - 32622327
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagt 274  Q
    |||||||||||  ||| |||||||||||||| ||||| ||||||||||||||  | || ||||||||||||    
T  32622257 tcaagttggtctcttatgttttaaaagtttccagttgatccaaaacgttacctacgttagaataagttagt 32622327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 3217572 - 3217501
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagt 202  Q
    |||||||||||||||||||||  | ||| ||||| |||| || ||| ||||||||||| ||||||||||||||    
T  3217572 aaaggcttaattgcatgtttgtccccttgtgttt-atttcaggtttcaagttggtcccctatgttttaaaagt 3217501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 15988010 - 15988074
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaa 199  Q
    |||||||||||||||||||  | |||||||||   ||||||||  |||||||||||||||||||||||    
T  15988010 aggcttaattgcatgtttggccacttatgttta--tttagtttc-aagttggtcccttatgttttaaa 15988074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 15988050 - 15988125
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
    |||||||||||  ||| |||||||| ||| |||||||||||||| | |||| | | |||||||||||||||| ||||    
T  15988050 tcaagttggtcccttatgttttaaa-gttccaagttggtccaaatcattactcacattggaataagttagtcccttc 15988125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 32644388 - 32644432
Alignment:
Q  158 atgttttattttagtttttaagttggtcccttatgttttaaaagt 202  Q
    ||||| |||||||| |||||||||| || ||||||||||||||||    
T  32644388 atgttatattttagattttaagttgatctcttatgttttaaaagt 32644432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 36006319 - 36006244
Alignment:
Q  137 taattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggt 213  Q
    |||||||||| |||||  ||||| ||||||||||  |||||||||||||  |||||||||||| || | ||||||||    
T  36006319 taattgcatgattgattccttat-ttttattttaagttttaagttggtcatttatgttttaaatgttttaagttggt 36006244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 43531954 - 43532005
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    |||||||||| ||| ||||||||| | ||||||| ||||||||||||||||||    
T  43531954 tttattttaggtttcaagttggtctcctatgttt-aaaagtctcaagttggtc 43532005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 133 - 343
Target Start/End: Complemental strand, 63138 - 62925
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| | ||||||||||||| |||||||||||  |||| |||||||||||    
T  63138 ggcttaattgcatgtttgatcccttatgttt-attttagtttttaaattggtccttcatgttttaaaagtttcaagttggtcccttacattttaaaagtt 63040  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac----gtttaaagatttggattgacaatatgggtgatagaacttaac 328  Q
    ||| |||||||||||||||||| | | |||||||||||||||||||||||||||     |||||||||   | ||||||||||||||||| |||||||||    
T  63039 tcaggttggtccaaaacgttactcactttggaataagttagtctcttccgtcacttaaatttaaagatccaggttgacaatatgggtgatggaacttaac 62940  T
Q  329 ttatatagaaaatca 343  Q
    |||| || |||||||    
T  62939 ttatttaaaaaatca 62925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 127 - 281
Target Start/End: Original strand, 62718 - 62871
Alignment:
Q  127 aaaaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgtttta 226  Q
    |||||||||||||||||||| |||||| ||||| ||| |||| | |||| ||||||||| | |||||||||||||| |||||||  ||  ||||||||||    
T  62718 aaaaaaggcttaattgcatgcttgatcccttatattt-atttcaattttcaagttggtctcgtatgttttaaaagtttcaagttaatcccttacgtttta 62816  T
Q  227 aaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    ||||||| |||||||||||||||||||| | | ||||||||||||||||||||||    
T  62817 aaagttttaagttggtccaaaacgttactcacgttggaataagttagtctcttcc 62871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 130 - 351
Target Start/End: Original strand, 33992330 - 33992556
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||| |||| | || ||||||  |||||||||||||    
T  33992330 aaaggcttaattgcatgtttgatcccttatgttt-attttagttttcaagttcgtcccttatgttttataagttttaaattggtcccttacgttttaaaa 33992428  T
Q  230 gtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttc-----cgtcacgtttaaagatttggattgacaatatgggtgatagaa-c 323  Q
    ||||||||||||| ||||||||||  | | ||| ||||||||||||| |||     | | |||||||||||||||||||||||||||| ||||||||| |    
T  33992429 gtttcaagttggttcaaaacgttattcacgttgaaataagttagtctattccaccacttaacgtttaaagatttggattgacaatatgagtgatagaatc 33992528  T
Q  324 ttaacttatatagaaaatcaatttaaaa 351  Q
    ||||||||| |||||||||| |||||||    
T  33992529 ttaacttatttagaaaatcagtttaaaa 33992556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 129 - 286
Target Start/End: Original strand, 16642744 - 16642900
Alignment:
Q  129 aaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaa 228  Q
    |||||| ||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||  | |||||||||||  || |||||||||    
T  16642744 aaaaggattaattgcaagtttgatcccttatgttt-attttaggttttaagttggtcccttatgttttaaatatttcaagttggtctcttgcgttttaaa 16642842  T
Q  229 agtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
     |||||||||||||| |||||||||| | | ||||||||||||||||||||| |||||    
T  16642843 ggtttcaagttggtctaaaacgttacgcacgttggaataagttagtctcttctgtcac 16642900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 272
Target Start/End: Complemental strand, 33992752 - 33992612
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||| | || |||||   ||||||||||||||    
T  33992752 aaggcttaattgcatgtttgatcccttatgttt-attttagtttttaaattggtcctttatgttttaaaagttttaaattggttccttacgttttaaaag 33992654  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagtta 272  Q
    ||| || ||||| ||||||||||| |   |||||||||||||    
T  33992653 ttttaaattggttcaaaacgttactcatgttggaataagtta 33992612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 19935431 - 19935551
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    ||||||||||||||||| | |||||||||||| ||||| | |||||||||||||| |||||||||| || | |||||||||||  | | ||||||||||     
T  19935431 aggcttaattgcatgttgggtctcttatgttt-atttttggttttaagttggtccattatgttttataaatttcaagttggtccctgatgttttaaaag- 19935528  T
Q  232 ttcaagttggtccaaaacgttac 254  Q
    |||||||||||||||||| ||||    
T  19935529 ttcaagttggtccaaaacattac 19935551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 25508216 - 25508099
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    ||||||||||||||| || |||| |||  ||||||| |||||||||| ||||||||||||||||||| ||||||| ||| ||||  ||||   ||||| |    
T  25508216 ttaattgcatgtttggtcccttaagttg-attttaggttttaagttgctcccttatgttttaaaagtttcaagttcgtcctttatatttttttagtttta 25508118  T
Q  236 agttggtccaaaacgttac 254  Q
    |||||||||||||||||||    
T  25508117 agttggtccaaaacgttac 25508099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 351
Target Start/End: Complemental strand, 16643086 - 16642937
Alignment:
Q  208 gttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac------gtttaaagatttgga 301  Q
    ||||||| ||||  ||||||||||||||||||| | | ||| ||||| |   ||| |||||||||||||||||||||||      ||||||||||||||     
T  16643086 gttggtcctttatattttaaaagtttcaagttgcttctaaatgttactcagattgaaataagttagtctcttccgtcacttgaccgtttaaagatttggg 16642987  T
Q  302 ttgacaatatgggtgatagaacttaacttatatagaaaatcaatttaaaa 351  Q
    ||||||| || ||||||  || ||||||||| |||||||||| |||||||    
T  16642986 ttgacaacatcggtgatgaaatttaacttatttagaaaatcagtttaaaa 16642937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 34065368 - 34065287
Alignment:
Q  173 ttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttac 254  Q
    ||||||||||||| |||||||||||||||| | |||||||||  |||  |||||||||||| ||||||||  ||||||||||    
T  34065368 ttttaagttggtctcttatgttttaaaagttttaagttggtcccttatattttaaaagtttaaagttggttaaaaacgttac 34065287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 19328409 - 19328472
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaa 200  Q
    ||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||| ||||||||    
T  19328409 ttaattgcatgattgatcccttatgttt-attttagtttttaagttggtcctttatattttaaaa 19328472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 32290831 - 32290905
Alignment:
Q  164 tattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttg 240  Q
    |||||||| |||||||||| ||||||| ||||||||| | || |||||||  |||| ||||||||||||||||||||    
T  32290831 tattttaggttttaagttgatcccttaagttttaaaaatttctagttggt--tttatgttttaaaagtttcaagttg 32290905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 32291181 - 32291060
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||||| |||||||||  | ||||||||||||||| | | ||||| |||  |||||||||||| |||| |||||| |  |||| ||||| | | ||    
T  32291181 tttattttaggttttaagttaattccttatgttttaaaaatttaaagttagtctcttacgttttaaaggttttaagttgatttaaaaggttactcacttt 32291082  T
Q  262 ggaataagttagtctcttccgt 283  Q
      ||||||||||||||||||||    
T  32291081 aaaataagttagtctcttccgt 32291060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 19935814 - 19935738
Alignment:
Q  134 gcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttg 211  Q
    ||||||||||||||||  |||  ||||||  ||||||| |||||||||||| |||| |||||||||||| | ||||||    
T  19935814 gcttaattgcatgtttagtctggtatgttc-attttagcttttaagttggtaccttgtgttttaaaagttttaagttg 19935738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 136 - 347
Target Start/End: Original strand, 54341204 - 54341418
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||| ||||||||| |||||||| ||||| ||||||  | ||||||||||||| | |||||||||  |||||||||||||||||||    
T  54341204 ttaattgcatgtttgatcccttatgttt-attttagtatttaaattggtcgttcatgttttaaaagttttaagttggtcccttacgttttaaaagtttca 54341302  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac----gtttaaagatttggattgacaatatgggtgatagaacttaactta 331  Q
    ||||||||||||||||||| | | ||||||||||| |||||||||||||||     |||||||||   | ||||||||||||||||| ||||||||||||    
T  54341303 agttggtccaaaacgttactcacgttggaataagtcagtctcttccgtcacttaaatttaaagatccaggttgacaatatgggtgatggaacttaactta 54341402  T
Q  332 tatagaaaatcaattt 347  Q
    | || |||||||||||    
T  54341403 tttaaaaaatcaattt 54341418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 132 - 347
Target Start/End: Complemental strand, 33419957 - 33419738
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||  |||||||||||||||    
T  33419957 aggcttaattgcatgtttgatcccttatgttt-attttactttttaagttggtcccttatgttttaaaagtttcaagatggtcccttacgttttaaaagt 33419859  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcacgt-----ttaaagatttggattgacaatatgggtgatagaactta 326  Q
    || ||||||| | |||||||||| | | ||||||||| ||||||||||| ||||| |     ||||||||| || ||||  |||||||||||  ||||||    
T  33419858 tttaagttggactaaaacgttactcacgttggaataaattagtctcttcagtcacttaacgattaaagattcgggttgaggatatgggtgatgaaactta 33419759  T
Q  327 acttatatagaaaatcaattt 347  Q
    |||||| || |||| ||||||    
T  33419758 acttatttaaaaaaccaattt 33419738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 33419564 - 33419686
Alignment:
Q  161 ttttattttagttttt-aagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcc 259  Q
    |||||||||||||||| || |||| ||||||| |||||||||| | |||||||||  |||||||||||||||||||||||||||||||||||||| | |     
T  33419564 ttttattttagttttttaaattggccccttatcttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcaca 33419663  T
Q  260 ttggaataagttagtctcttccg 282  Q
    ||| |||||||||||||||||||    
T  33419664 ttgaaataagttagtctcttccg 33419686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 127 - 274
Target Start/End: Complemental strand, 51388180 - 51388033
Alignment:
Q  127 aaaaaaggcttaatt-gcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgtttt 225  Q
    ||||||||||||||| | |||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||| ||  |||| ||||    
T  51388180 aaaaaaggcttaatttgaatgtttgattccttatgttt-attttagtttttaagttggtctcttatgttttaaaagttttaagttgatcccttacatttt 51388082  T
Q  226 aaaagtttcaagttggtccaaaacgttacccgccttggaataagttagt 274  Q
    |||||||| || ||||||||||||||||| | | ||| |||||||||||    
T  51388081 aaaagttttaaattggtccaaaacgttactcacgttgaaataagttagt 51388033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 162 - 343
Target Start/End: Complemental strand, 37285934 - 37285749
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||||||  | ||||  |||||||| |||||||||||| ||||||||||| | | ||    
T  37285934 tttattttaggttttaagttggtcccttatattttaaaagtttcaagttgaccctttatattttaaaaatttcaagttggttcaaaacgttactcacatt 37285835  T
Q  262 ggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatgggtgatagaacttaacttatatagaaaatca 343  Q
    | |||||||||||  | |||||||      |||| |||||||||| ||||||||||||| |||| || ||||||||| ||||||||||    
T  37285834 gaaataagttagt-gcctccgtcacttaaccgttaaaagatttgg-ttgacaatatgggagataaaatttaacttatttagaaaatca 37285749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 19540851 - 19540962
Alignment:
Q  163 ttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttg 262  Q
    ||||||||| |||||||||||||||||||||||||||||| | | ||||||| |||| ||||||| ||||| || ||||| ||||||||||| | | ||     
T  19540851 ttattttaggttttaagttggtcccttatgttttaaaagttttatgttggtcctttatgttttaacagttttaaattggttcaaaacgttactcacatta 19540950  T
Q  263 gaataagttagt 274  Q
    ||||||||||||    
T  19540951 gaataagttagt 19540962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 162 - 339
Target Start/End: Complemental strand, 30548120 - 30547936
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaa--gttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcc 259  Q
    |||||||||| ||| ||||||||||| ||| |||||||||| ||||  |||| ||  |||||||||||||||||||||||||||||||||||||| |       
T  30548120 tttattttaggtttcaagttggtcccatatcttttaaaagtttcaaaagttgatctcttacgttttaaaagtttcaagttggtccaaaacgttactcatg 30548021  T
Q  260 ttggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatgggtgatagaacttaacttatatagaaa 339  Q
    ||| ||||||||||||  ||| ||||      |||||||||| ||  ||||||||||||||||||  || ||||||||| ||||||    
T  30548020 ttgaaataagttagtccattcagtcacttgaccgtttaaaga-ttctattgacaatatgggtgatgaaatttaacttatttagaaa 30547936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 40485013 - 40484929
Alignment:
Q  164 tattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaac 249  Q
    |||||||| ||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||| |||||||||||| |||||||    
T  40485013 tattttaggtttcaagttggtcccttatgttt-aaaagtttcaaattggtcatttatgttttaaaggtttcaagttggaccaaaac 40484929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 19541248 - 19541129
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||||||||||||||||| |||||||||| ||||| | ||||||||| |||  |||||||||| | || |||||||||||  |||| |||||||| ||    
T  19541248 ggcttaattgcatgtttgatatcttatgttt-atttttggttttaagttagtcttttatgttttatacgtttcaagttggtcccttacattttaaaattt 19541150  T
Q  233 tcaagttggtccaaaacgtta 253  Q
    |||| ||| || |||||||||    
T  19541149 tcaaattgatctaaaacgtta 19541129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 244
Target Start/End: Original strand, 30547738 - 30547846
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||||||||||||| |||||||||||||| |||||| |||| | ||||||| |||||||||||||||| | |||||||||  |||| ||||||| |||    
T  30547738 ggcttaattgcatgtt-gatctcttatgttt-attttaatttt-aggttggtcgcttatgttttaaaagttttaagttggtcccttactttttaaaggtt 30547834  T
Q  233 tcaagttggtcc 244  Q
    | ||||||||||    
T  30547835 ttaagttggtcc 30547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 33241846 - 33241963
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    |||||||||||| ||| || |||| |||| ||||||| ||| |||||| ||||||||||||||||||| | || |||||   |||  |||||||||||||    
T  33241846 cttaattgcatggttggtcccttaagttt-attttaggtttcaagttgttcccttatgttttaaaagttttaatttggttccttatattttaaaagtttc 33241944  T
Q  235 aagttggtccaaaacgtta 253  Q
    || ||||||||||||||||    
T  33241945 aaattggtccaaaacgtta 33241963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 54111417 - 54111518
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    |||||||||||||||||| ||||| | | ||||||  ||||| |||| ||| ||||||||||||||| | |||||| ||||||| |||||||||||||||    
T  54111417 ttaattgcatgtttgatcccttatatgt-attttacattttatgttgatcctttatgttttaaaagttttaagttgttcatttatgttttaaaagtttca 54111515  T
Q  236 agt 238  Q
    |||    
T  54111516 agt 54111518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 37285546 - 37285665
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||| ||||||| ||| ||||||||| ||||||| || ||||||| | ||||  ||||||||||| |||||||  ||  |||||||||||| |||    
T  37285546 ggcttaattacatgtttaatcccttatgttt-attttaggttataagttgattccttcagttttaaaagtttcaagttaatcccttacgttttaaaggtt 37285644  T
Q  233 tcaagttggtccaaaacgtta 253  Q
    |||||||||||  ||||||||    
T  37285645 tcaagttggtctcaaacgtta 37285665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 54341512 - 54341438
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaa 207  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||  |||||||||| ||||    
T  54341512 aggcttaattgtatgtttgatctcttatg-tttattttaatttttgagttggtcccttagattttaaaagtttcaa 54341438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 343
Target Start/End: Original strand, 48618476 - 48618693
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    ||||||||||| ||| |||| |  ||||||||| ||||||| |||||| |||||   ||||||||||||||| | || |||||   ||| ||||||| |     
T  48618476 aaggcttaattacatatttggttccttatgttt-attttaggttttaaattggttatttatgttttaaaagttttaaattggttccttatgttttaacaa 48618574  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac------gtttaaagatttggattgacaatatgggtgatagaact 324  Q
    |||||||||||| ||||||||||| | | || ||||||||||  | |||  |||||      |||||||||||||| | |||||||||||||||  || |    
T  48618575 tttcaagttggttcaaaacgttactcacattagaataagttaaccccttttgtcacttgattgtttaaagatttgggtcgacaatatgggtgatgaaatt 48618674  T
Q  325 taacttatatagaaaatca 343  Q
    ||  |||| ||||||||||    
T  48618675 tactttatttagaaaatca 48618693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 283
Target Start/End: Complemental strand, 48618897 - 48618747
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||||||||||||||| |||||  ||||||||||  || ||||||||| ||||||||| |||  | | |||||||||  ||| ||||||||  |    
T  48618897 aggcttaattgcatgtttgatcccttat-atttattttaggcttcaagttggtctcttatgtttgaaacattttaagttggtctcttaagttttaaagtt 48618799  T
Q  232 ttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgt 283  Q
    || ||||| ||||||||| |||    | |||||||||||||||  |||||||    
T  48618798 ttaaagtttgtccaaaactttatttacgttggaataagttagttccttccgt 48618747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 7015373 - 7015486
Alignment:
Q  173 ttttaagttggtcccttatgtttt-aaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagtt 271  Q
    |||||||||| | | ||||||||| |||||| | |||||||||  ||| |||||||||||||| | |||||||||||| |||| | |  | |||||||||    
T  7015373 ttttaagttgattctttatgtttttaaaagttttaagttggtcccttaagttttaaaagtttcgatttggtccaaaacattactcacactagaataagtt 7015472  T
Q  272 agtctcttccgtca 285  Q
    ||| | ||||||||    
T  7015473 agtttattccgtca 7015486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 7015685 - 7015590
Alignment:
Q  191 tgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    |||||||||| | | ||||||| | ||||  |||| ||||||| ||||| ||| |||| |||||   | |||||||||||||||||||||||||||    
T  7015685 tgttttaaaaattttaagttggccctttatattttgaaagttttaagtttgtctaaaatgttacttacgttggaataagttagtctcttccgtcac 7015590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 39639912 - 39639875
Alignment:
Q  165 attttagtttttaagttggtcccttatgttttaaaagt 202  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  39639912 attttaggttttaagttggtcccttatattttaaaagt 39639875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 21925456 - 21925393
Alignment:
Q  143 catgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaa 207  Q
    |||||||||||||||||| |||||||||| |||||| | ||||  |||||||| |||||| ||||    
T  21925456 catgtttgatctcttatg-tttattttagattttaaataggtctattatgtttgaaaagtttcaa 21925393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 133 - 347
Target Start/End: Complemental strand, 10567875 - 10567659
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||| ||||||| ||||||||| |||||| |||| || ||| ||  | ||||||||| ||| |||||||||||  ||||||||||||||||    
T  10567875 ggcttaattgcatatttgatcccttatgttt-attttaattttcaaattgatct-tcatgttttaagagtttcaagttggtcccttacgttttaaaagtt 10567778  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac----gtttaaagatttggattgacaatatgggtgatagaacttaac 328  Q
    ||||||||||||||||| |||| | | |||||||||||||||||||||||||||     ||||||||| | | |||| ||||| |||||| |||||||||    
T  10567777 tcaagttggtccaaaacattactcacgttggaataagttagtctcttccgtcacttaaatttaaagatctaggttgataatataggtgatggaacttaac 10567678  T
Q  329 ttatatagaaaatcaattt 347  Q
    |||| || |||||||||||    
T  10567677 ttatttaaaaaatcaattt 10567659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 34829968 - 34829829
Alignment:
Q  135 cttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttc 234  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||| |||||||  |||||||||||| |||||    
T  34829968 cttaattgcatgtttgatctcttatgttt-attttaggttttaagttggtctcttatgttttaaaagtttcatgttggtcccttacgttttaaaggtttc 34829870  T
Q  235 aagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    |||||||| |||||||||||||   ||| ||||||||||||    
T  34829869 aagttggttcaaaacgttacccatattgaaataagttagtc 34829829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 10567471 - 10567607
Alignment:
Q  143 catgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggt 242  Q
    ||||||||||| ||||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||    
T  10567471 catgtttgatcccttatgttt-attttagttttcaaattggtcccttacgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggt 10567569  T
Q  243 ccaaaacgttacccgccttggaataagttagtctcttc 280  Q
     ||||||||||| | | ||| |||||||||||||||||    
T  10567570 tcaaaacgttactcacattgaaataagttagtctcttc 10567607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 6612053 - 6611934
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    ||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||| |||||||||||| |||||||||||  |||||||||||| ||    
T  6612053 aggcttaattgcatgtttgatgtcttatgttt-attttagattttaagttgatcccttgtgttttaaaagtttcaagttggtcccttacgttttaaatgt 6611955  T
Q  232 ttcaagttggtccaaaacgtt 252  Q
    |||||||||||||||||||||    
T  6611954 ttcaagttggtccaaaacgtt 6611934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 133 - 273
Target Start/End: Original strand, 17342886 - 17343025
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    ||||||||||||||||| ||| | ||||||| ||||||| ||| |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  17342886 ggcttaattgcatgtttaatcccgtatgttt-attttaggtttcaagttggtcccttatgttttaaaaatttcaagttggtcttttacgttttaaaagtt 17342984  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagttag 273  Q
    |||| ||||||||||||||||| | ||||  ||||||||||    
T  17342985 tcaaattggtccaaaacgttactcaccttaaaataagttag 17343025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 28613578 - 28613430
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttca 235  Q
    ||||||| |||||||||| ||||||||| |||||| ||||||| ||||||| |  |||||||||| | |||||||||||  |||||||||||||||||||    
T  28613578 ttaattgtatgtttgatcccttatgttt-attttaatttttaaattggtccttcttgttttaaaaatttcaagttggtcccttacgttttaaaagtttca 28613480  T
Q  236 agttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    |||||||| ||||||||   | | ||||||||||||||||| |||||||||    
T  28613479 agttggtcaaaaacgtt-ttctcattggaataagttagtcttttccgtcac 28613430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 162 - 342
Target Start/End: Complemental strand, 32629437 - 32629252
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||| | |||||||||||||  ||||||||||||||| |  ||||||||  |||  |||||||| ||||||||| || ||||||||||||| | ||    
T  32629437 tttatttttggttttaagttggtcttttatgttttaaaagttttgagttggtcccttatattttaaaaatttcaagttcgttcaaaacgttacccacatt 32629338  T
Q  262 ggaataagttagtctcttccgtca------cgtttaaagatttggattgacaatatgggtgatagaacttaacttatatagaaaatc 342  Q
    | ||||||||||||||||||||||      ||||||||||||||| || |||||||| |||||  || ||||||||| |||||||||    
T  32629337 gtaataagttagtctcttccgtcatttaaccgtttaaagatttgg-ttaacaatatgagtgatgtaatttaacttatttagaaaatc 32629252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 6611637 - 6611755
Alignment:
Q  162 tttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgcctt 261  Q
    |||||||||| ||| | |||||||||||||||||||||||| |||||||||||  | | |||||||||||||||||||||| ||||||||| | |   ||    
T  6611637 tttattttaggtttcaggttggtcccttatgttttaaaagtttcaagttggtccctcatgttttaaaagtttcaagttggttcaaaacgttgctctaatt 6611736  T
Q  262 ggaataagttagtctcttc 280  Q
    |||||||||||||| ||||    
T  6611737 ggaataagttagtcccttc 6611755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 279
Target Start/End: Complemental strand, 11122317 - 11122171
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    |||||||||||| |||||||||| ||||||||| ||||||| || ||||||||||  ||||||||||||||| | ||||| ||   |||||||||||| |    
T  11122317 aaggcttaattgtatgtttgatcccttatgttt-attttaggttgtaagttggtcatttatgttttaaaagtttgaagttagtatcttacgttttaaagg 11122219  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagttagtctctt 279  Q
     |||||||| |||| ||||||||| | | ||||||| ||||||||||||    
T  11122218 attcaagttcgtcc-aaacgttactcacgttggaattagttagtctctt 11122171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 29674857 - 29674956
Alignment:
Q  144 atgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtc 243  Q
    |||||||||| ||||||||| |||| || ||| ||||||||||||||| |||||||||| ||||||||||   |||||||||||||||||||||||||||    
T  29674857 atgtttgatcccttatgtttaattt-aggtttcaagttggtcccttatattttaaaagtttcaagttggttccttacgttttaaaagtttcaagttggtc 29674955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 32629059 - 32629198
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaag 230  Q
    |||| |||||| ||||||||||| ||||||||| ||||||| ||||||||| | || ||||||||||||| | | |||||||||  |||| ||||||| |    
T  32629059 aaggtttaattacatgtttgatcccttatgttt-attttaggttttaagttagacctttatgttttaaaaattttaagttggtcccttacattttaaagg 32629157  T
Q  231 tttcaagttggtccaaaacgttacccgccttggaataagtt 271  Q
    ||||||||| |||||||||||||| | | ||| ||||||||    
T  32629158 tttcaagttagtccaaaacgttactcacgttgaaataagtt 32629198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 22793299 - 22793437
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtt 232  Q
    |||||||||| || ||||  | ||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||  ||| ||||||||||||    
T  22793299 ggcttaattggatatttggccccttatgttt-attttaggtttcaagttggtcccttatgttttaaaagtttcaagttggtcccttatgttttaaaagtt 22793397  T
Q  233 tcaagttggtccaaaacgttacccgccttggaataagtta 272  Q
    | || ||  |||| |||||||  | |||||||||||||||    
T  22793398 ttaatttcatccacaacgttagtcaccttggaataagtta 22793437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 6273997 - 6273889
Alignment:
Q  137 taattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaa 236  Q
    ||||||||||||||  ||||||||||| ||| ||| |||| |||| ||  |||||||||||||||| ||||||||||||| || ||||||||||| ||||    
T  6273997 taattgcatgtttgc-ctcttatgttt-attctaggttttcagttagtttcttatgttttaaaagtttcaagttggtcatgtatgttttaaaagtatcaa 6273900  T
Q  237 gttggtccaaa 247  Q
    |||||||||||    
T  6273899 gttggtccaaa 6273889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 29674918 - 29675022
Alignment:
Q  177 aagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtct 276  Q
    |||||||| ||||| ||||||||||| |||||||||||  ||| |||||||||||||||||||| |||||||| | || | | ||||||||| ||||||     
T  29674918 aagttggttccttacgttttaaaagtttcaagttggtcccttaagttttaaaagtttcaagttgatccaaaacatgactcacgttggaataaattagtcc 29675017  T
Q  277 cttcc 281  Q
    |||||    
T  29675018 cttcc 29675022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 28613191 - 28613261
Alignment:
Q  131 aaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagt 202  Q
    |||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  28613191 aaggcttagttgcatgtttgatcccttatattt-attttagtttttaagttggtcccttacgttttaaaagt 28613261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 22793679 - 22793606
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagtt 210  Q
    |||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||||||    
T  22793679 ttaattgcatgtttgatcccttatgttt-attttaggtttcaagttggtcccttacgttttaaaagtttcaagtt 22793606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 28705927 - 28705819
Alignment:
Q  130 aaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaa 229  Q
    |||||||||||||||| | |  |||||||||||| ||||||  ||||||||||||||||| |||||||||| | ||||||| |||  ||| |||||||||    
T  28705927 aaaggcttaattgcatatctagtctcttatgttt-attttaagttttaagttggtcccttttgttttaaaactttcaagttagtcccttatgttttaaaa 28705829  T
Q  230 gtttcaagtt 239  Q
     |||||||||    
T  28705828 ctttcaagtt 28705819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 17343210 - 17343147
Alignment:
Q  223 tttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac 286  Q
    |||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||| ||||    
T  17343210 tttaaaagtttcaagttggtccaaaatgttactcaccttagaataagttagtctcttccatcac 17343147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 28613236 - 28613311
Alignment:
Q  206 aagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttcc 281  Q
    |||||||||  ||||||||||||||||  |||||||||||||||||||| |   ||||||||||||||||||||||    
T  28613236 aagttggtcccttacgttttaaaagttgtaagttggtccaaaacgttactcatattggaataagttagtctcttcc 28613311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 341
Target Start/End: Original strand, 34829622 - 34829762
Alignment:
Q  206 aagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtctcttccgtcac------gtttaaagatttg 299  Q
    |||||||| | ||| ||||||||||||||||||| || ||| || |||| | | |||||||||||||||| | ||||||||      |||||||| || |    
T  34829622 aagttggttacttatgttttaaaagtttcaagttagttcaatacattactcacattggaataagttagtcac-tccgtcacctgattgtttaaagtttcg 34829720  T
Q  300 gattgacaatatgggtgatagaacttaacttatatagaaaat 341  Q
    | |||||||||||||||||  || ||||||||| ||||||||    
T  34829721 ggttgacaatatgggtgatgaaatttaacttatttagaaaat 34829762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 22793641 - 22793572
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttag 273  Q
    |||||||||||  ||||||||||||||||||||||| |||||||| ||||| |   ||||||||||||||    
T  22793641 tcaagttggtcccttacgttttaaaagtttcaagtttgtccaaaatgttactcatattggaataagttag 22793572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 34829575 - 34829655
Alignment:
Q  129 aaaaggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagtt 210  Q
    |||||| ||||||||| ||||||||  |||||||| ||||||  ||||||||||||  |||||||||||||||| |||||||    
T  34829575 aaaaggtttaattgcaggtttgatcctttatgttt-attttaagttttaagttggttacttatgttttaaaagtttcaagtt 34829655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 13498463 - 13498388
Alignment:
Q  163 ttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagt 238  Q
    ||||||||| |||||||| |||| |||||||||||||||| | | |||||||  ||| || |||||||||||||||    
T  13498463 ttattttaggttttaagtcggtctcttatgttttaaaagttttatgttggtctcttatgtattaaaagtttcaagt 13498388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 6210345 - 6210296
Alignment:
Q  152 tctcttatgttttattttagtttttaagttggtcccttatgttttaaaagt 202  Q
    |||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  6210345 tctcttatgttt-attttagattttaagttggtgccttatgttttaaaagt 6210296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 28705852 - 28705759
Alignment:
Q  177 aagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagtt 271  Q
    ||||| |||||||||||||||||| | |||||||  || || | |||||||||||||||| | ||| ||||| ||||||| ||||| ||||||||    
T  28705852 aagttagtcccttatgttttaaaactttcaagttattcctt-atgttttaaaagtttcaaataggttcaaaatgttacccaccttgaaataagtt 28705759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 6273656 - 6273727
Alignment:
Q  204 tcaagttggtcatttacgttttaaaagtttcaagttggtccaaaacgttacccgccttggaataagttagtc 275  Q
    ||||||||||  |||| |||||||| |||| |||||||||||||||||||| | | ||  ||||||||||||    
T  6273656 tcaagttggttctttatgttttaaacgttttaagttggtccaaaacgttactcacattaaaataagttagtc 6273727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 11121939 - 11122005
Alignment:
Q  177 aagttggtcccttatgttttaaaagtctcaagttggtcattt-acgttttaaaagtttcaagttggt 242  Q
    |||||| |||||||| |||||||||| ||||||||||| ||| | || || ||||||||||||||||    
T  11121939 aagttgatcccttatattttaaaagtttcaagttggtcctttaatgtctttaaagtttcaagttggt 11122005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 7213436 - 7213370
Alignment:
Q  133 ggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagt 202  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||| |||||   |||||||||||||||    
T  7213436 ggcttaattgcatgtttgatc-cttatg-cttattttagtttttaaattggt-ttttatgttttaaaagt 7213370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 29675257 - 29675189
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaag 201  Q
    ||||||||||| ||||||| |   |||||||| ||||||| ||||||||||||| || ||||||||||||    
T  29675257 aggcttaattgtatgtttggtgctttatgttt-attttaggttttaagttggtctctcatgttttaaaag 29675189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 6273620 - 6273695
Alignment:
Q  138 aattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtc 214  Q
    |||||||||||| |||| |||||||| ||||||  ||| |||||||| | |||||||||||| || | |||||||||    
T  6273620 aattgcatgtttaatctattatgttt-attttacgtttcaagttggttctttatgttttaaacgttttaagttggtc 6273695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 280
Target Start/End: Complemental strand, 9986 - 9841
Alignment:
Q  134 gcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagttt 233  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||| || |   |||||||||||||||||    
T  9986 gcttaattgcatgtttgatctcttatgttt-attttaggttttaagttggtctcttatgttttaaaagtttcaagatgattgcttacgttttaaaagttt 9888  T
Q  234 caagttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
     || ||||| ||||| ||||| ||| ||| |||||| ||||||||||    
T  9887 taatttggtacaaaatgttactcgcattgaaataagctagtctcttc 9841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 9576 - 9674
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||| ||||||  |||||||||| ||||    
T  9576 aggcttaattccatgtttgatctcttatgttt-attttaatttttaagatggtcccttatgttttaaaagtttcaaattggtcccttacgttttataagt 9674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 280
Target Start/End: Complemental strand, 10629 - 10484
Alignment:
Q  134 gcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagttt 233  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||| || |   |||||||||||||||||    
T  10629 gcttaattgcatgtttgatctcttatgttt-attttaggttttaagttggtctcttatgttttaaaagtttcaagatgattgcttacgttttaaaagttt 10531  T
Q  234 caagttggtccaaaacgttacccgccttggaataagttagtctcttc 280  Q
     || ||||| ||||| ||||| ||| ||| |||||| ||||||||||    
T  10530 taatttggtacaaaatgttactcgcattgaaataagctagtctcttc 10484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 10219 - 10317
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaagttggtcatttacgttttaaaagt 231  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||| ||||||  |||||||||| ||||    
T  10219 aggcttaattccatgtttgatctcttatgttt-attttaatttttaagatggtcccttatgttttaaaagtttcaaattggtcccttacgttttataagt 10317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 47491 - 47417
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtctcaa 207  Q
    ||||||||||||||||||| || ||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||    
T  47491 aggcttaattgcatgtttggtcccttatgttt-attttaggttttaagttggtcgcttatgttttaaaagtttcaa 47417  T

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Target: scaffold0015; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 47291 - 47346
Alignment:
Q  136 ttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatg 192  Q
    ||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||    
T  47291 ttaattgcatgtttgatctctaatg-tttattttagatttcaagttggtcccttatg 47346  T

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Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 29607 - 29674
Alignment:
Q  132 aggcttaattgcatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaa 200  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||||| || |||| |||||||||    
T  29607 aggcttaattacatgtttgatctcttatg-tttattttagttttcaagttgatctcttacgttttaaaa 29674  T

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