View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20617_high_6 (Length: 419)
Name: NF20617_high_6
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20617_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Original strand, 8058618 - 8059008
Alignment:
| Q |
12 |
acagaaagagaaaacagaaaaaacgtttcttcttcataaacaacgtgatggaatctgaacacgtgtggcgcgtgggagcgtgcaacagaaacccttctct |
111 |
Q |
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| T |
8058618 |
acagaaagagaaaacagaaaaaacgtttcttcttcaaaaacaacgtgatggaatctgaacacgtgtggcgcgtgggagcgtgcaacagaaacccttctct |
8058717 |
T |
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| Q |
112 |
caacaacgacaacaatatcttcaacggaataatgctccgtttccgaccaatcgcaccgaagccagtcaccggagaacaaactccggcgaaccagagcacc |
211 |
Q |
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| T |
8058718 |
caacaacgacaacaatatcttcaacggaataatgctccgtttccgaccaatcgcaccgaagccagtcaccggagaacaaactccggcgaaccagagcacc |
8058817 |
T |
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| Q |
212 |
actgcttcacttccaggtaaaagaactaagagaaagtacgttagaattcgacgaaacaacggctacgtcaaaaagaatagttgtaagaaatcttcaccgg |
311 |
Q |
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| T |
8058818 |
actgcttcacttccaggtaaaagaactaagagaaagtacgttagaattcgaagaaacaacggttacatcaaaaagaatagttgtaagaaatcttcaccgg |
8058917 |
T |
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| Q |
312 |
aagaagaaattgttgttcaacattcaaattcaaatgatgaaatgaaaaggaatcttgcagttgttacgttacagttgatgccggagaaagc |
402 |
Q |
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| T |
8058918 |
aagaagaaattgttgttcaacattcaaattcaaatgatgaaatgaaaaggaatcttgcagttgttacgttacagttgatgccggagaaagc |
8059008 |
T |
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