View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20617_low_10 (Length: 349)
Name: NF20617_low_10
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20617_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 49642615 - 49642963
Alignment:
| Q |
1 |
tcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttggat |
100 |
Q |
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| T |
49642615 |
tcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttggat |
49642714 |
T |
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| Q |
101 |
ccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaaccat |
200 |
Q |
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| T |
49642715 |
ccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaaccat |
49642814 |
T |
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| Q |
201 |
ggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttagaatatccat |
300 |
Q |
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| T |
49642815 |
ggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttagaatatccat |
49642914 |
T |
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| Q |
301 |
gcttaacggaagatcctaaaaccgctaacgccgtttatcttccttacta |
349 |
Q |
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| T |
49642915 |
gcttaacggaagatcctaaaaccgctaacgccgtttatcttccttacta |
49642963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 6623275 - 6623170
Alignment:
| Q |
213 |
aaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgtt-agaatat--ccatgcttaacgg |
309 |
Q |
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| T |
6623275 |
aaaacccataacagttcccatagttgacaca-aatcgacccatacatgcttgaactcatattcaatccccgtatgttaagaatatccccatgcttaacaa |
6623177 |
T |
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| Q |
310 |
aagatcc |
316 |
Q |
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||||||| |
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| T |
6623176 |
aagatcc |
6623170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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