View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20617_low_14 (Length: 286)
Name: NF20617_low_14
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20617_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 30429081 - 30428831
Alignment:
| Q |
18 |
atgttgtaaacgatcaatcagatctttctcttaaaaacaaagcctctcatgaggatggttagctttataaataaaatcaattattattagtgtttgtttc |
117 |
Q |
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| T |
30429081 |
atgttgtaaacaatcaatcagatctttctcttaaaaacaaagcctctcgtgaggatggttagctttataaataaaatcaattattattagtgtttgtttc |
30428982 |
T |
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| Q |
118 |
ttgtagtgaattattcgagcacaaaaataatgtaaacataaattcattaactgatatgtttacatacgact-aacaataacatggtatggcacaaaatct |
216 |
Q |
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| T |
30428981 |
ttgtagtga---atttgagcacaaaaataatgtaaacataaattcattaactgatatgtttacatacgactaaacaataacatggtatggcacaaaatct |
30428885 |
T |
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| Q |
217 |
tgatttttacttactagtgatatcttcnnnnnnngcaacatggatacaattcct |
270 |
Q |
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| T |
30428884 |
tgatttttacttactagtgatatcttctttttttgcaacatggatacaattcct |
30428831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 30439910 - 30439766
Alignment:
| Q |
74 |
ggttagctttataaataaaatcaattattattagtgtttgtttcttgta--gtgaattattcgagcacaaaaataatgtaaacataaa-ttcattaactg |
170 |
Q |
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| T |
30439910 |
ggttagcttcatacatacgaccaattattgttagtgtttgtttcttgtaatgtgaattt---gaacgcaaaaataatgtaaacataaatttcattaacat |
30439814 |
T |
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| Q |
171 |
atatgtttacatacgactaacaataacatggtatggcacaaaatcttg |
218 |
Q |
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| T |
30439813 |
atatgttttcatacgacaaactataaactgatgtggcacaaactcttg |
30439766 |
T |
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