View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20617_low_16 (Length: 274)
Name: NF20617_low_16
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20617_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 48453045 - 48453300
Alignment:
| Q |
1 |
aaagttatgtcagttaaatcaaataaacttatatcgatgaatgaaactnnnnnnncctaagcattttttctaaactaataacaaaaacttgtataactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48453045 |
aaagttatgtcagttaaatcaaataaacttatatcgatgaatgaaactaaaaaaacctaagcattttttctaaactaataacaaaaacttgtataactat |
48453144 |
T |
|
| Q |
101 |
acacataaaatacttccaatgaaaacttgcaactccataaaggaatcaaatcaaaaggctatatttggaaagataatggagatacaagtgtaataaactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48453145 |
acacataaaatacttccaatgaaaacttgcaactccataaaggaatcaaatcaaaaggctatatttggaaagataatggagatacaagtgtaataaactc |
48453244 |
T |
|
| Q |
201 |
aatatgtattagaatattagcatgtttaaatgcaacgatcttgattgcatgattct |
256 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48453245 |
aatatgtattagaatattaggatgtttaaatgcaacgatcttgattgcatgattct |
48453300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University