View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20617_low_19 (Length: 225)
Name: NF20617_low_19
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20617_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 12792051 - 12791868
Alignment:
| Q |
20 |
gaaatagtgctgtcataatagagacatgatactgatttttcatagatatagtttctttgttgaaaatatatgtcagacaagccaaacaagtaccatagtg |
119 |
Q |
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| T |
12792051 |
gaaatagtgctgtcataatagagacatgatactgatttttcatagatatagtttctttgttgaaaatatatgtcacacaagccaaacaagtaccatagtg |
12791952 |
T |
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| Q |
120 |
tttcagtaatctactgctcttaatgtatggttaattggttattaaggcaagcacgcatacagaaatgttgatgttagaaaaggattgaaatg |
211 |
Q |
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| T |
12791951 |
tttcagtaatctactgctcttaatgtatg--------gttattaaggcaagcacgcatacagaaatgttgatgttagaaaaggattgaaatg |
12791868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 12729156 - 12728973
Alignment:
| Q |
20 |
gaaatagtgctgtcataatagagacatgatactgatttttcatagatatagtttctttgttgaaaatatatgtcagacaagccaaacaagtaccatagtg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
12729156 |
gaaatagtgctgtcataatagagacatgatactgatttttcatagatatagtttctttgttgaaaatatatgtcacacaagccaaataagtaccatagtg |
12729057 |
T |
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| Q |
120 |
tttcagtaatctactgctcttaatgtatggttaattggttattaaggcaagcacgcatacagaaatgttgatgttagaaaaggattgaaatg |
211 |
Q |
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| T |
12729056 |
tttcagtaatctactgctcttaatgtatg--------gttattaaggcaagcacgcatacagaaatgttgatgttagaaaaggattgaaatg |
12728973 |
T |
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