View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20617_low_6 (Length: 427)
Name: NF20617_low_6
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20617_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Complemental strand, 3883478 - 3883086
Alignment:
| Q |
14 |
agaatatcacaaatgattgaagaacatgataaaaacaaacattcaagcaaccacgcattgcatcatgcaagataaagtttcattttaactgaaatcaaca |
113 |
Q |
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| T |
3883478 |
agaatatcacaaatgattgaagaacatgataaaaacaaacattcaagcaaccatgcattgcatcatgcaagataaagtttcattttaactgaaatcaaca |
3883379 |
T |
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| Q |
114 |
tttcaaaaaatttatgtatttgctctcaccttaggacaaaagcgaacatcaagagtcttcaacatatatagcagcttcaacagcttcctcatcaatattg |
213 |
Q |
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| T |
3883378 |
tttcaaaaaatttatgtatttgctctcaccttaggacaaaagcgaacatcaagagtcttcaacatatatagcagcttcaacagcttcctcgtcaatattg |
3883279 |
T |
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| Q |
214 |
caagcctaaaatattcaaattgtctcaacttgagcacgcaaataactgtaacaatgaattaatggatgggttgcaaaaatgactaaatttaagtcataca |
313 |
Q |
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| T |
3883278 |
caagcctaaaatattcaaattgtctcaacttgagcacgcaaataactataacaatgaattaatgaatgggttgcaagaatgactaaatttaagtcataca |
3883179 |
T |
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| Q |
314 |
attgaacaatattcctcaaatcatttgaggaatatcaaatgtcagatttatttcaagtaaaggacagaggtcaactccataccctaacagtttttaag |
411 |
Q |
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| T |
3883178 |
attgaacaatattcctcaaatgat-----gaatatcaaatgtcagatttatttcaagtaaaggacagaggtcaactccataccctaacagtttttaag |
3883086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 104 - 408
Target Start/End: Complemental strand, 3869994 - 3869652
Alignment:
| Q |
104 |
gaaatcaacatttcaaaaa-att-tatgtatttgctctcaccttaggacaaaagcgaacatcaagagtcttcaacat-----------atatagcagctt |
190 |
Q |
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| T |
3869994 |
gaaatcaacatttcaaaaatattatatgcatttgctctcaccttaggacagaagcgaacatcaagagtctccaacatagtacattttgatatagcagctt |
3869895 |
T |
|
| Q |
191 |
caacagcttcctcatcaatattgcaagcctaaaatattcaaattgtctcaac------------ttgagcacgcaaataactgt------aacaatgaat |
272 |
Q |
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| T |
3869894 |
caacagcctcctcatcaatattgcacgcctaaaaaaaccaaattgtccaaacgcgaacaaacatattagaaagcaaataactattaacacaacaatgaat |
3869795 |
T |
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| Q |
273 |
taatggatgggttgcaaaaatgactaaatttaagtca-tacaatt-----gaacaatattcctcaaatcatttgaggaatatcaaatgtcagatttattt |
366 |
Q |
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| T |
3869794 |
caaaggatgggttgcaagaatgactgaagttaagtcattacaattttaaaaaaaaatattcctcaagtgatttgaggaatatcaaatgtcacatttattt |
3869695 |
T |
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| Q |
367 |
caagtaaagga-cagaggtcaactccataccctaacagttttt |
408 |
Q |
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| T |
3869694 |
taggtgaaggaccagaggtcaaccccataccctaacatttttt |
3869652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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