View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20617_low_9 (Length: 353)
Name: NF20617_low_9
Description: NF20617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20617_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 42063096 - 42062752
Alignment:
| Q |
1 |
gctgtagatcctaaagctaagccagttaatctatgtgttgtgctcgtgtttattttggcaataatgagtttgtgtaatggatcacataactagtactgat |
100 |
Q |
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| T |
42063096 |
gctgtagatcctgaagctaagccagttaatctatgtgttgtgctcgtgtttattttggcaataatgagtttgtgtaatggatcacataactagtactgat |
42062997 |
T |
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| Q |
101 |
tctccatatctcagtgatagttgacactggagagggatctttgcagcaataagaggataaagtgaagaaagagtgcaatgcgaagttcttttggttcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
42062996 |
tctccatatctcagtgatagttgacactggagagggatctttgtagcaataagaggataaagtgaagaaagagtgcaaggcaaagttcttttggttcaaa |
42062897 |
T |
|
| Q |
201 |
gtctaaaatttcccttgataggtttcccattaatgtgaagtaactcaccctccccctcatccttcgtattcatttcagttgggatgcttccagcggaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42062896 |
gtctaaaatttcccttgataggtttcccattattgtgaagcaactcaccctccccctcatctttcgtattcatttcagttgggatgcttccagcggaagg |
42062797 |
T |
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| Q |
301 |
ctgagttacgttcattacttagctgatcagattggtatgatgatg |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42062796 |
ctgagttacgttcattacttagctgatcagattggtatgatgatg |
42062752 |
T |
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