View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_high_107 (Length: 202)

Name: NF20618_high_107
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_high_107
NF20618_high_107
[»] chr1 (2 HSPs)
chr1 (18-184)||(787586-787752)
chr1 (155-184)||(787089-787118)
[»] chr3 (3 HSPs)
chr3 (20-120)||(42078243-42078343)
chr3 (138-184)||(42078387-42078433)
chr3 (120-184)||(35942622-35942686)
[»] chr7 (3 HSPs)
chr7 (62-116)||(21082443-21082497)
chr7 (120-184)||(3986760-3986824)
chr7 (35-63)||(21082514-21082542)
[»] chr4 (1 HSPs)
chr4 (120-164)||(21226367-21226411)
[»] scaffold0169 (1 HSPs)
scaffold0169 (120-178)||(27014-27072)
[»] chr6 (1 HSPs)
chr6 (123-184)||(18749035-18749096)
[»] chr5 (1 HSPs)
chr5 (120-164)||(29500546-29500590)
[»] chr2 (2 HSPs)
chr2 (120-164)||(15765495-15765539)
chr2 (120-164)||(33003144-33003188)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 787586 - 787752
Alignment:
Q  18 aggggaaagcggttctcttaaataaatagagacaaattgctttggacatcaattgttttttcactttttctattgcatctgtcaccttatagaatcatca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  787586 aggggaaagcggttctcttaaataaatagagacaaattgctttggacatcaattgttttttcactttttctattgcatctgtgactttatagaatcatca 787685  T
Q  118 attgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgt 184  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  787686 attgttattgttgttgaaggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgt 787752  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 787118 - 787089
Alignment:
Q  155 tgagatgatggtggtggtgttgatgattgt 184  Q
    ||||||||||||||||||||||||||||||    
T  787118 tgagatgatggtggtggtgttgatgattgt 787089  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 42078243 - 42078343
Alignment:
Q  20 gggaaagcggttctcttaaataaatagagacaaattgctttggacatcaattgttttttcactttttctattgcatctgtcaccttatagaatcatcaat 119  Q
    |||| ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || |  ||||||||||    
T  42078243 gggagagcggttctcttaaatatatggcgacaaattgctttggacatcaattgttttttcacttttcctattgcatctatcactttctttaatcatcaat 42078342  T
Q  120 t 120  Q
    |    
T  42078343 t 42078343  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 42078387 - 42078433
Alignment:
Q  138 tgttggaggtttagtaatgagatgatggtggtggtgttgatgattgt 184  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  42078387 tgttggaggtttagtaatgatatggtggtggtggtgttgatgattgt 42078433  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 35942622 - 35942686
Alignment:
Q  120 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgt 184  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||| || |||| ||| ||||    
T  35942622 tgttattgttgttgatggtggtggaggtgtagtaatgagatgatggtgatgttgttaatggttgt 35942686  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 21082497 - 21082443
Alignment:
Q  62 gacatcaattgttttttcactttttctattgcatctgtcaccttatagaatcatc 116  Q
    |||||||||||||||||||||||| || |||||||| ||||||| ||||||||||    
T  21082497 gacatcaattgttttttcacttttcctgttgcatctatcaccttctagaatcatc 21082443  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 3986824 - 3986760
Alignment:
Q  120 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgt 184  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||| || || |||| ||||||||    
T  3986824 tgttattgttgttgatggtggtggaggtgtagtaatgagatgatgatgatgatgttaatgattgt 3986760  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 21082542 - 21082514
Alignment:
Q  35 ttaaataaatagagacaaattgctttgga 63  Q
    |||||||||||||||||||||||||||||    
T  21082542 ttaaataaatagagacaaattgctttgga 21082514  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 21226367 - 21226411
Alignment:
Q  120 tgttattgtttttgatggtgttggaggtttagtaatgagatgatg 164  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  21226367 tgttattgttgttgatggtggtggaggtgtagtaatgagatgatg 21226411  T

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Target: scaffold0169 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 27072 - 27014
Alignment:
Q  120 tgttattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgat 178  Q
    |||||||||| ||||||||| |||||||  ||||||||||||||| || || |||||||    
T  27072 tgttattgttgttgatggtggtggaggtgaagtaatgagatgatgatgatgttgttgat 27014  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 18749096 - 18749035
Alignment:
Q  123 tattgtttttgatggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgt 184  Q
    |||||||||| |||||| | ||||| || ||||||||||||| || || |||||||||||||    
T  18749096 tattgttttttatggtggtagaggtgtaataatgagatgatgatgttgttgttgatgattgt 18749035  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 29500546 - 29500590
Alignment:
Q  120 tgttattgtttttgatggtgttggaggtttagtaatgagatgatg 164  Q
    |||||||||| ||||||||| |||| || ||||||||||||||||    
T  29500546 tgttattgttgttgatggtggtggatgtgtagtaatgagatgatg 29500590  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 15765495 - 15765539
Alignment:
Q  120 tgttattgtttttgatggtgttggaggtttagtaatgagatgatg 164  Q
    |||||||||| ||||||||  ||||||| ||||||||||||||||    
T  15765495 tgttattgttgttgatggtagtggaggtatagtaatgagatgatg 15765539  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 33003188 - 33003144
Alignment:
Q  120 tgttattgtttttgatggtgttggaggtttagtaatgagatgatg 164  Q
    |||||||||| ||||||||| ||||| | ||||||||||||||||    
T  33003188 tgttattgttgttgatggtggtggagatgtagtaatgagatgatg 33003144  T

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