View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_high_13 (Length: 554)

Name: NF20618_high_13
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_high_13
NF20618_high_13
[»] chr2 (6 HSPs)
chr2 (18-536)||(15870180-15870698)
chr2 (240-348)||(45196540-45196648)
chr2 (55-142)||(18835986-18836073)
chr2 (69-122)||(17511485-17511538)
chr2 (79-131)||(2010434-2010486)
chr2 (218-310)||(21979637-21979729)
[»] chr4 (3 HSPs)
chr4 (161-349)||(53074260-53074448)
chr4 (263-318)||(48435839-48435894)
chr4 (99-131)||(52906437-52906469)
[»] chr3 (4 HSPs)
chr3 (401-438)||(21754772-21754809)
chr3 (70-117)||(24882240-24882287)
chr3 (53-122)||(47364811-47364880)
chr3 (99-131)||(13806160-13806192)
[»] chr7 (1 HSPs)
chr7 (99-141)||(29906649-29906691)
[»] chr1 (1 HSPs)
chr1 (300-349)||(1495853-1495902)


Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Complemental strand, 15870698 - 15870180
Alignment:
Q  18 gaagaatacattttcagaaacaacgaaaaaatgcaaaagaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870698 gaagaatacattttcagaaacaacgaaaaaatgcaaaagaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatg 15870599  T
Q  118 aaaaccgaaaacatgaaaagtaaactgctagaaatttgggaattaccttgttttcaagaagatttgtccaagctttgccgctcaagccatagcgaattgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870598 aaaaccgaaaacatgaaaagtaaactgctagaaatttgggaattaccttgttttcaagaagatttgtccaagctttgccgctcaagccatagcgaattgc 15870499  T
Q  218 aaacttgataatgtcaagaggaatatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870498 aaacttgataatgtcaagaggaatatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccag 15870399  T
Q  318 ttggcatatactgctattaatgtagcaatctgaaaagaaaaacaaaacctcaaaacaagtccaattggcatatacgcagttatactgatgaacatgtcat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  15870398 ttggcatatactgctattaatgtagcaatctgaaaagaaaaacaaaacctcaaaacaagtccaattcgcatatacgcagttataccgatgaacatatcat 15870299  T
Q  418 aagttgttttcatatgacataagtgcttagctaattgtttgaaatagtttatgaaattagcgtgattaagttgtttgtccaaatgcaccgaaagaaacaa 517  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870298 aagttgttttcatatgacataactgcttagctaattgtttgaaagagtttatgaaattagcgtgattaagttgtttgtccaaatgcaccgaaagaaacaa 15870199  T
Q  518 gtaacaccgtatatagaca 536  Q
    |||||||||||||||||||    
T  15870198 gtaacaccgtatatagaca 15870180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 348
Target Start/End: Original strand, 45196540 - 45196648
Alignment:
Q  240 atatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagttggcatatactgctattaatg 339  Q
    ||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||||||||||  || ||||||||  |||| || ||||| || ||||| | ||    
T  45196540 atatagaaaataatgctgtagagccaaatgacacctgcccaaccccatccaattcctttcatacttgcaaactcccaatttgcatacacagctatcagtg 45196639  T
Q  340 tagcaatct 348  Q
    | |||||||    
T  45196640 tggcaatct 45196648  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 18835986 - 18836073
Alignment:
Q  55 agaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaaccgaaaacatgaaaagtaaac 142  Q
    |||||||  |||||| |||| | | ||||||||| ||||| |  |||||||||||||||||| ||||| | || ||||||||||||||    
T  18835986 agaaaatgatgatgagaatagtgggtctatattattttatatttattagttgaagtgaaaataaaaacaggaatcatgaaaagtaaac 18836073  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 17511538 - 17511485
Alignment:
Q  69 aaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaac 122  Q
    ||||| || ||||||||||| |||||||  || |||||||||||||||||||||    
T  17511538 aaaatgttggatctatattattttatgtttatcagttgaagtgaaaatgaaaac 17511485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 2010434 - 2010486
Alignment:
Q  79 atctatattagtttatgtcaattagttgaagtgaaaatgaaaaccgaaaacat 131  Q
    ||||||||||  ||||||  ||||||||||| |||||||||||| ||||||||    
T  2010434 atctatattatattatgtttattagttgaagagaaaatgaaaacagaaaacat 2010486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 310
Target Start/End: Original strand, 21979637 - 21979729
Alignment:
Q  218 aaacttgataatgtcaagaggaatatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaa 310  Q
    |||||||| ||||||||||||||| ||   ||| || ||||| | |||||| ||||| ||||||| ||| |||||||| | |||||| |||||    
T  21979637 aaacttgagaatgtcaagaggaatgtatgtaataatgctgtagatccagataactccagcccatctccacccaattccattgattctagcaaa 21979729  T

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Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 161 - 349
Target Start/End: Original strand, 53074260 - 53074448
Alignment:
Q  161 taccttgttttcaagaagatttgtccaagctttgccgctcaagccatagcgaattgcaaacttgataatgtcaagaggaatatagaaaatgatactgtaa 260  Q
    ||||||||| || || |||||  ||||||| ||||| |||||    ||||| || |||||||| || | ||| || ||||||||||| |  || |||||     
T  53074260 taccttgttgtctaggagattgttccaagccttgccactcaatatgtagcggatggcaaacttcatcacgtcgagtggaatatagaagacaatgctgtag 53074359  T
Q  261 agccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagttggcatatactgctattaatgtagcaatctg 349  Q
    |||||||| ||||||||||| ||||||||||||||||| |   |||| ||||||||||||||||||||||||||||  |||||||||||    
T  53074360 agccagattactcctgcccaaccccaaccaattccttgtacctttgcgaatccccagttggcatatactgctattatggtagcaatctg 53074448  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 48435839 - 48435894
Alignment:
Q  263 ccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagt 318  Q
    |||||| ||||| ||||||| |||||||||||| | |||||| |||||||||||||    
T  48435839 ccagattactccagcccatctccaaccaattccattgattctagcaaatccccagt 48435894  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 52906437 - 52906469
Alignment:
Q  99 attagttgaagtgaaaatgaaaaccgaaaacat 131  Q
    |||||||||||||||||||||||| ||||||||    
T  52906437 attagttgaagtgaaaatgaaaacagaaaacat 52906469  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 21754772 - 21754809
Alignment:
Q  401 actgatgaacatgtcataagttgttttcatatgacata 438  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  21754772 actgatgaacatgtcataagttgttttcatatgtcata 21754809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 24882240 - 24882287
Alignment:
Q  70 aaatattcgatctatattagtttatgtcaattagttgaagtgaaaatg 117  Q
    ||||||| ||||||||||| |||||||  |||||||||||||||||||    
T  24882240 aaatattagatctatattattttatgtttattagttgaagtgaaaatg 24882287  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 47364811 - 47364880
Alignment:
Q  53 aaagaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaac 122  Q
    ||||||||| |||| |||||||||  || ||| ||  |||||||  ||||||||||||||||||||||||    
T  47364811 aaagaaaatggtgaggaaaatattaaatttattttcttttatgtttattagttgaagtgaaaatgaaaac 47364880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 13806160 - 13806192
Alignment:
Q  99 attagttgaagtgaaaatgaaaaccgaaaacat 131  Q
    |||||||||||||||||||||||| ||||||||    
T  13806160 attagttgaagtgaaaatgaaaacagaaaacat 13806192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 29906649 - 29906691
Alignment:
Q  99 attagttgaagtgaaaatgaaaaccgaaaacatgaaaagtaaa 141  Q
    |||||||||||||||||||||||| | |||||||| |||||||    
T  29906649 attagttgaagtgaaaatgaaaacagtaaacatgagaagtaaa 29906691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 1495853 - 1495902
Alignment:
Q  300 attcttgcaaatccccagttggcatatactgctattaatgtagcaatctg 349  Q
    ||||||||||||||||| || ||||| |||||||| ||||| ||||||||    
T  1495853 attcttgcaaatccccaattagcatacactgctataaatgttgcaatctg 1495902  T

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