View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_22 (Length: 497)
Name: NF20618_high_22
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 19172462 - 19171983
Alignment:
| Q |
1 |
ccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatcttgctcgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172462 |
ccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaatcttgctcgtt |
19172363 |
T |
|
| Q |
101 |
cttttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcatggaggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19172362 |
cttttcttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcgtggaggaa |
19172263 |
T |
|
| Q |
201 |
tccatcagaaaccctaagaacacgtatggaacaaatagagtgcggtttgaagtccatcgttccaacacttaacgataggcttacacgcgcggaaggctgt |
300 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19172262 |
tccatcagaaaccctaataacacgtatggagcaaatagagtgcggtttgaagtccatcgttccaacgcttaacgataggcttacacgcgcggaaggctgt |
19172163 |
T |
|
| Q |
301 |
ttcgttgaacacgttgttggtgactggttttcgtgtaaagatcgcggtgataataaagggaaagctgttttgggaaatgatgttagggtttacatagaag |
400 |
Q |
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||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19172162 |
ttcattaaaaacgttgttggtgactggttttcgtgtaaagatcgcggtgataataaagggaaagttgttttgggaaatgatgttagggtttacatagaag |
19172063 |
T |
|
| Q |
401 |
agtttgttagtgttgttctttatgcaaataggttaaggagaagtgttcttgttgatattattagagctgcaagtgtttat |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19172062 |
agtttgttagtgttgttctttatgcaaataggttaaggagaagtgttcttgttgatattattagtgctgcaagtgtttat |
19171983 |
T |
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