View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_31 (Length: 433)
Name: NF20618_high_31
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 39006674 - 39006290
Alignment:
| Q |
16 |
atgaaaacacattggtaagttagtccaattagtgaagattcaattcaaattttacaaagactttagtttgaatcttgttgacgatgtgaagagtttgtta |
115 |
Q |
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| T |
39006674 |
atgaaaacacattggtaaattagtccaattagtgaagattcaattcaaattttacaaagactttagtttgaatcttgttgacaatgtgaagagtttgtta |
39006575 |
T |
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| Q |
116 |
gtagatatcatataattatctctatcaattt-------------------attgacactcaaggatttttaaatgtaactcacctaaattttttctatnn |
196 |
Q |
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| T |
39006574 |
gtaaatatcatgtacttatctctatcaattttataagtttagagacttttattgacactcaaagatttttaaatgcaactcacctaaaaattttctatga |
39006475 |
T |
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| Q |
197 |
nnnnntcaaaa-cacattgatgggtcataataactctaataatctgtcaataaattagatccactaaggacttgaacaaaaatttatcatttgggcagcg |
295 |
Q |
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| T |
39006474 |
aaaaataaaaaacacattgatgggtcatagtaactctaataatctgtcaataaattagatccactgaggacttgaacaaaaatttatcatttgggcagcg |
39006375 |
T |
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| Q |
296 |
atacagtgacatggaaatcaatatttttccttgaaca---taatttctaatccatccacccacttctcaattgctccaacattta |
377 |
Q |
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| T |
39006374 |
atatagtgacatggaaatcaatatttttccttgaacatagtaatttctaatccatccacccacttctcaattgctccaatattta |
39006290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 39006226 - 39006166
Alignment:
| Q |
373 |
atttacaatcaacttgtattttttctccatgagtaactaattctcattttgttgtgtagcc |
433 |
Q |
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| T |
39006226 |
atttacaatcaacttgtattttttctccatgagtaactaattctcattttgttgtgtagcc |
39006166 |
T |
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