View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_36 (Length: 405)
Name: NF20618_high_36
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 30511333 - 30511134
Alignment:
| Q |
1 |
caatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttctggatggaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30511333 |
caatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttctggatggaata |
30511234 |
T |
|
| Q |
101 |
caaagtgttctttcaggtttctcttcttccctataacttttaatttcttgtcttcatagtggccgagtcaaaaacaatgatagagacatatgggagcttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||| |||||||||| ||||||||||| |
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| T |
30511233 |
caaagtgttctttcaggtttctcttcttccctataacttttaatttctt-tcttcatagagactgagtcaaaaacaacgatagagacaaatgggagcttc |
30511135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 24708561 - 24708761
Alignment:
| Q |
1 |
caatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttctggatggaata |
100 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
24708561 |
caatatattgggatacgcttatagcaatgaagaagaagttgtcaaatatgtagcaactatgttgcctattattgcagtatccaactttctggatggactt |
24708660 |
T |
|
| Q |
101 |
caaagtgttctttcaggtttctcttcttccctataacttttaatttcttgtcttcatagtggccgagtcaaaaacaatgatagagacatatgggagcttc |
200 |
Q |
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||| ||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| ||| |
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| T |
24708661 |
caatgtgttctttcaggtttctcttattccaaataacgtttaatttattgtcttcatagtggccgattaaaaaacaatgatagagacatatgggagtttc |
24708760 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
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| |
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|
| T |
24708761 |
t |
24708761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 206 - 385
Target Start/End: Complemental strand, 30510543 - 30510363
Alignment:
| Q |
206 |
gcgttgttctcgtatcttttacttctaatccagtacgttgttcta-caatgcaaatgatatccttcttaactatgatccaggcactgctagaggagttgg |
304 |
Q |
| |
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|||||||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30510543 |
gcgttgttttcgtatcttttacttccaatatggtctgttgttctaacaatgcaaatgatatccttcttaactatgatccaggcactgctagaggagttgg |
30510444 |
T |
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| Q |
305 |
ttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgtattagcttttgt |
385 |
Q |
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| T |
30510443 |
ttggcaaaagatcggcgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgtattagcttttgt |
30510363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 204 - 382
Target Start/End: Original strand, 24709040 - 24709219
Alignment:
| Q |
204 |
tggcgttgttctcgtatcttttacttctaatccagtacgttgttcta-caatgcaaatgatatccttcttaactatgatccaggcactgctagaggagtt |
302 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
24709040 |
tggcgttgttttcgtatcttttacttctaatccagtttcttgttctaacaatgcaagtgatatccttgttaactacgatccaggcactgttagaggagtt |
24709139 |
T |
|
| Q |
303 |
ggttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgtattagcttt |
382 |
Q |
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||| ||||||| || || |||||||||||||||||||| |||||||| || |||| ||||||||| |||||||||||||| |
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| T |
24709140 |
ggtaggcaaaatattggcgcatatgtcaatctcgggtcttactatttggtagggactccagcagccgttgtattagcttt |
24709219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30501632 - 30501554
Alignment:
| Q |
1 |
caatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagta |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| || |||||||| |
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| T |
30501632 |
caatatatggggatatgcttatagcaatgaagaagaagtggtcaaatatgtagcaaatatgatgccacttcttgcagta |
30501554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 30501237 - 30501126
Alignment:
| Q |
274 |
actatgatccaggcactgctagaggagttggttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgt |
373 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||| || || | || | ||||||||| || |||||||||||||| || ||||||||||| ||||| |
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| T |
30501237 |
actatgattcaggcactgctagaggatgtggttggcagaaaatttgcgcgtttgtcaatcttggatcatactatttagtcggaattccagcagctgttgt |
30501138 |
T |
|
| Q |
374 |
attagcttttgt |
385 |
Q |
| |
|
|||||||||||| |
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|
| T |
30501137 |
attagcttttgt |
30501126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 30483665 - 30483551
Alignment:
| Q |
6 |
tatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttctggatggaatacaaag |
105 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| || || |||||||||| |||| |||| ||| |||| |||||| |||| || ||||| || ||| |
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| T |
30483665 |
tatggggctacgcttatagcaatgaagaagaagtggtaaattatgtagcaactatgatgccaattcttgccgtatcccacttactagatggcatgcaagc |
30483566 |
T |
|
| Q |
106 |
tgttctttcaggttt |
120 |
Q |
| |
|
||||||||||||||| |
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| T |
30483565 |
tgttctttcaggttt |
30483551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 30482895 - 30482784
Alignment:
| Q |
274 |
actatgatccaggcactgctagaggagttggttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgt |
373 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| || || || |||| ||| ||||| || ||||| |||||| ||||||||||||| || ||||| |
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| T |
30482895 |
actataattcaggcactgctagaggatgtggttggcagaaaattggcgcatttgttaatcttggatcatattatttaattgggattccagccgctgttgt |
30482796 |
T |
|
| Q |
374 |
attagcttttgt |
385 |
Q |
| |
|
||| |||||||| |
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|
| T |
30482795 |
attcgcttttgt |
30482784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 30475769 - 30475659
Alignment:
| Q |
2 |
aatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttctggatggaatac |
101 |
Q |
| |
|
||||||||||| ||||| |||| ||| || |||||||||||| | ||||||||||||| || ||| ||||||||||| ||||||||||| | ||| |
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|
| T |
30475769 |
aatatatggggctatgcatataccaaagacattgaagttgtcaaacaaatagcaattatgttaccaattcttgcagtatcctactttctggattcactac |
30475670 |
T |
|
| Q |
102 |
aaagtgttctt |
112 |
Q |
| |
|
||||||||||| |
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|
| T |
30475669 |
aaagtgttctt |
30475659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 367
Target Start/End: Complemental strand, 30475419 - 30475332
Alignment:
| Q |
280 |
atccaggcactgctagaggagttggttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagc |
367 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| |||||| ||||||| | ||||||| |||||||||||||||||||||||| |
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|
| T |
30475419 |
atccaggcattgctagaggatctggtttgcaaaaagctggtgcagttgtcaatttggggtcatgctatttagttgggattccagcagc |
30475332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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