View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_40 (Length: 381)
Name: NF20618_high_40
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 41846393 - 41846040
Alignment:
| Q |
18 |
cttctcccgtaggagttcgctcttgcgtggaatttgaagaacaagaagctgatcttccaaaatgggttcggtctgttgtgaaggatgagtggacatcaga |
117 |
Q |
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| T |
41846393 |
cttctccagtaggagttcgctcttgcgtggaatttgaagaacaagaagctgatcttccaaaatgggttcggtctgttgtgaaggatgagtggacatcaga |
41846294 |
T |
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| Q |
118 |
ggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaa |
217 |
Q |
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| T |
41846293 |
ggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaa |
41846194 |
T |
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| Q |
218 |
aggccaacaatgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcaattcactttcac |
317 |
Q |
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| T |
41846193 |
aggccaacaatgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcgattcactttcac |
41846094 |
T |
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| Q |
318 |
cttcacttgccacgactgaagattgcttagcttaatagcactagtgttattcat |
371 |
Q |
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| T |
41846093 |
cttcacttgccacgactgaagattgcttagcttaatagcactagtgttattcat |
41846040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 68 - 340
Target Start/End: Original strand, 26890655 - 26890927
Alignment:
| Q |
68 |
gatcttccaaaatgggttcggtctgttgtgaaggatgagtggacatcagaggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttg |
167 |
Q |
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| T |
26890655 |
gatcttcccaaatgggttcgatcagtcgtgagagaagagtggactggggaggtttttgatcaagaacttctgcgatacaagaacattgaggaagagcttg |
26890754 |
T |
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| Q |
168 |
tttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaaaggccaacaatgttggatgttgttaagatgatcgaggatattagggtgga |
267 |
Q |
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| T |
26890755 |
tgtcaatgctgcatgttgggttggcttgtgtggtgcagcagccagagaagaggccaactatggtagatgttgttaaaatgattgaggatatcagagtgga |
26890854 |
T |
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| Q |
268 |
acaatctcctctaagagaggattatgatgaatctcgcaattcactttcaccttcacttgccacgactgaagat |
340 |
Q |
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| T |
26890855 |
gcaatctcctctgtgtgaggactatgacgaatcacgcaattcgctttcaccttccattcccaccactgaagat |
26890927 |
T |
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