View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_42 (Length: 377)
Name: NF20618_high_42
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 35344429 - 35344129
Alignment:
| Q |
13 |
aatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttcttaaggtaattagattcaactgtttc |
112 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35344429 |
aatagctgctacattagacaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttcttaaggtaattagattcaactgtttc |
35344330 |
T |
|
| Q |
113 |
tcttcnnnnnnnnnnnnnnnnacttatttaatggaatataaatatataaggaaagttaggtaaaccatacagaaaattagggatactattttctacatcc |
212 |
Q |
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||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35344329 |
tcttc-ttttgtatagtttttatttatttaatggaatataaatatataagaaaagttaggtaaaccatacagaaaattagggatactattttctacatcc |
35344231 |
T |
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| Q |
213 |
taatttgttgtatactttggtctaattatattatgcagttcatacatacttcacatcatg--tagagaaatttattattacaaggaaggtgttttataca |
310 |
Q |
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| T |
35344230 |
ta-----tgggaaa--ttggtctaattatattatgcacttcatacatacttcacatcatgtatagagaaatttagtattacaaggaaggtgttttataca |
35344138 |
T |
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| Q |
311 |
tgatttctc |
319 |
Q |
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||||||||| |
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| T |
35344137 |
tgatttctc |
35344129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 35361527 - 35361827
Alignment:
| Q |
13 |
aatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttcttaaggtaattagattcaactgtttc |
112 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35361527 |
aatagctgctacattagacaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttcttaaggtaattagattcaactgtttc |
35361626 |
T |
|
| Q |
113 |
tcttcnnnnnnnnnnnnnnnnacttatttaatggaatataaatatataaggaaagttaggtaaaccatacagaaaattagggatactattttctacatcc |
212 |
Q |
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| T |
35361627 |
tcttc-ttttgtatagtttttatttatttaatggaatataaatatataagtaaagttaggtaaaccatacagaaaattagggatactattttctacatcc |
35361725 |
T |
|
| Q |
213 |
taatttgttgtatactttggtctaattatattatgcagttcatacatacttcacatcatg--tagagaaatttattattacaaggaaggtgttttataca |
310 |
Q |
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| T |
35361726 |
ta-----tgggaaa--ttggtctaattatattatgcacttcatacatacttcacatcatgtatagagaaatttagtattacaaggaaggtgttttataca |
35361818 |
T |
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| Q |
311 |
tgatttctc |
319 |
Q |
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||||||||| |
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| T |
35361819 |
tgatttctc |
35361827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 35354685 - 35354763
Alignment:
| Q |
18 |
ctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaaatgttcttaaggtaat |
96 |
Q |
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||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
35354685 |
ctgctacattagagaaacaattcatcacagaagtcacacttttatctcgcctccaccatcaaaatgttcttaaggtaat |
35354763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 35358026 - 35358088
Alignment:
| Q |
257 |
catacttcacatcatgtagagaaatttattattacaaggaaggtgttttatacatgatttctc |
319 |
Q |
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||||||||||||||||||| |||||||| |||||||| |||||||||||||| | |||||||| |
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| T |
35358026 |
catacttcacatcatgtagggaaatttactattacaaagaaggtgttttataaacgatttctc |
35358088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 35355123 - 35355185
Alignment:
| Q |
257 |
catacttcacatcatgtagagaaatttattattacaaggaaggtgttttatacatgatttctc |
319 |
Q |
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|||| |||||||||||| ||||||| || ||| |||||||| || |||||||||| ||||||| |
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| T |
35355123 |
catatttcacatcatgttgagaaatctactataacaaggaatgtattttatacataatttctc |
35355185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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