View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_45 (Length: 366)
Name: NF20618_high_45
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 32 - 348
Target Start/End: Original strand, 12994757 - 12995069
Alignment:
| Q |
32 |
tttcttttgcgatgaagcactaatacacacactagacacgacgctaataata-ttttgaaaaatgaattaattgaatgtagtcacatgtgtcggacacgt |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||| | |
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| T |
12994757 |
tttcttttgcgatgaagcactaatacacacactagacacgacgctaataataattttgaaagatgaattaattgaatatagtcacatgtgtcggacacat |
12994856 |
T |
|
| Q |
131 |
cttctatcagaaatgtcagtgctacagaggtttcttgtaatagatagatcattacaatgtacaaatctaattnnnnnnnntcagcagctgacaagtagag |
230 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12994857 |
cttcgatcagaaatgtcagtgctacagaggtttcttgta----atagatcattacaatgtacaaatctaattaaaaaaaatcagcagctgacaagtagag |
12994952 |
T |
|
| Q |
231 |
gtttgactagtttatctttgaaattaaaatattagtctctttatttaacaccgtcctataatcctatccatagtgccgtattacaggaggtttatatttt |
330 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12994953 |
gtttgacttgtttatctttgaaattaaaatattcgtctctttatttaacaccgtcctataatcctatccatagtgccgtattacaggaggtttata-ttt |
12995051 |
T |
|
| Q |
331 |
taatcacaagtgaccttt |
348 |
Q |
| |
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|||| ||||||||||||| |
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| T |
12995052 |
taattacaagtgaccttt |
12995069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 32 - 348
Target Start/End: Original strand, 13069406 - 13069718
Alignment:
| Q |
32 |
tttcttttgcgatgaagcactaatacacacactagacacgacgctaataata-ttttgaaaaatgaattaattgaatgtagtcacatgtgtcggacacgt |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
13069406 |
tttcttttgcgatgaagcactaatacacacactagacacgacgctaataataattttgaaagatgaattaattgaatgtagtcacatgtgtcggacacat |
13069505 |
T |
|
| Q |
131 |
cttctatcagaaatgtcagtgctacagaggtttcttgtaatagatagatcattacaatgtacaaatctaattnnnnnnnntcagcagctgacaagtagag |
230 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13069506 |
cttcgatcagaaatgtcagtgctacagtggtttcttgta----atagatcattacaatgtacaaatctaattaaaaaaaatcagcagctgacaagtagag |
13069601 |
T |
|
| Q |
231 |
gtttgactagtttatctttgaaattaaaatattagtctctttatttaacaccgtcctataatcctatccatagtgccgtattacaggaggtttatatttt |
330 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
13069602 |
gtttgacttgtttatctttgaaattaaaatattcgtctctttatttaacaccgtcctataatcctatccatagtgccgtattacaggaggtttgta-ttt |
13069700 |
T |
|
| Q |
331 |
taatcacaagtgaccttt |
348 |
Q |
| |
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|||| ||||||||||||| |
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|
| T |
13069701 |
taattacaagtgaccttt |
13069718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 4991190 - 4991153
Alignment:
| Q |
85 |
tttgaaaaatgaattaattgaatgtagtcacatgtgtc |
122 |
Q |
| |
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| T |
4991190 |
tttgaaaaatgaattaattgaatgtaatcacatgtgtc |
4991153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 16274384 - 16274341
Alignment:
| Q |
85 |
tttgaaaaatgaattaattgaatgtagtcacatgtgtcggacac |
128 |
Q |
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| T |
16274384 |
tttgagaaatgaattaattgaatgtaatcacatgtgtctgacac |
16274341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 8281653 - 8281691
Alignment:
| Q |
83 |
attttgaaaaatgaattaattgaatgtagtcacatgtgt |
121 |
Q |
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|||||||||||||||||||||||||||| | |||||||| |
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| T |
8281653 |
attttgaaaaatgaattaattgaatgtaattacatgtgt |
8281691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 32577503 - 32577466
Alignment:
| Q |
90 |
aaaatgaattaattgaatgtagtcacatgtgtcggaca |
127 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
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| T |
32577503 |
aaaatgaattaattgaatgtaatcacatgtgtcggaca |
32577466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 18263110 - 18263142
Alignment:
| Q |
90 |
aaaatgaattaattgaatgtagtcacatgtgtc |
122 |
Q |
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| T |
18263110 |
aaaatgaattaattgaatgtagtcacatgtgtc |
18263142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 10356872 - 10356917
Alignment:
| Q |
79 |
taatattttgaaaaatgaattaattgaatgtagtcacatgtgtcgg |
124 |
Q |
| |
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||||| |||||||| | ||||||||||||||| ||||||||||||| |
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| T |
10356872 |
taataatttgaaaattaaattaattgaatgtaatcacatgtgtcgg |
10356917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 28525027 - 28525060
Alignment:
| Q |
89 |
aaaaatgaattaattgaatgtagtcacatgtgtc |
122 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
28525027 |
aaaaatgaattaattgaatgtaatcacatgtgtc |
28525060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 17292141 - 17292100
Alignment:
| Q |
83 |
attttgaaaaatgaattaattgaatgtagtcacatgtgtcgg |
124 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||| |
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| T |
17292141 |
attttgaaaaataaattaattgaatgtcatcacatgtgtcgg |
17292100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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