View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_49 (Length: 355)
Name: NF20618_high_49
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 23852605 - 23852935
Alignment:
| Q |
9 |
gacatcatcagagtgtaaataagtattgaaactgagatcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852605 |
gacatcatcagagtgtaaataagtattgaaactgagatcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggag |
23852704 |
T |
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| Q |
109 |
tcatagagagaaagaaattgtaactgattcatagaatggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaagat |
208 |
Q |
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| T |
23852705 |
tcatagagagaaagaaattgtaactgattcatagaatggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaagat |
23852804 |
T |
|
| Q |
209 |
acttgaactgtgaatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgtgggtaaca |
308 |
Q |
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| T |
23852805 |
acttgaactgtgaatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgtgggtaaca |
23852904 |
T |
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| Q |
309 |
tggattcctaaggtcaatttttacaacatgt |
339 |
Q |
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| T |
23852905 |
tggattcctaaggtcaatttttacaacatgt |
23852935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 22619298 - 22619626
Alignment:
| Q |
10 |
acatcatcagagtgtaaataagtattgaaactgagatcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggagt |
109 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||| ||| | |
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| T |
22619298 |
acatcatcagagtgtaaataagaatttaaactgagatcaagaaagttcaattttgtgaggtttctaaggttatttgggattattccactcaaattggaat |
22619397 |
T |
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| Q |
110 |
catagagagaaagaaattgtaactgattcatagaatggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaagata |
209 |
Q |
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| T |
22619398 |
cagagatagaaaggaattttaactgattcattaaatggataaatgttggtattggacttgaatttaaattgtttccactaaggtctaaattactaagatt |
22619497 |
T |
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| Q |
210 |
cttgaactgtgaatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgtgggtaacat |
309 |
Q |
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|| || | |||| ||| | |||||| | |||||| ||||||| ||||| | | ||||||||| | | ||| || || | |||||||||| ||| |
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| T |
22619498 |
tttaaaatttgaaagagatgtatggatttctggagctttaagcttattttttgttaatgaacagtttgattgatatttttttcttctttgtgggtagcat |
22619597 |
T |
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| Q |
310 |
ggattcctaaggtcaatttttacaacatg |
338 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
22619598 |
ggattcctaaggtcaatttttataacatg |
22619626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 23751905 - 23752233
Alignment:
| Q |
10 |
acatcatcagagtgtaaataagtattgaaactgagatcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggagt |
109 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||| ||| | |
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| T |
23751905 |
acatcatcagagtgtaaataagaatttaaactgagatcaagaaagttcaattttgtgaggtttctaaggttatttgggattattccactcaaattggaat |
23752004 |
T |
|
| Q |
110 |
catagagagaaagaaattgtaactgattcatagaatggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaagata |
209 |
Q |
| |
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|| ||| |||||| |||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||| |
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| T |
23752005 |
cagagatagaaaggaattttaactgattcattaaatggataaatgttggtattggacttgaatttaaattgtttccactaaggtctaaattactaagatt |
23752104 |
T |
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| Q |
210 |
cttgaactgtgaatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgtgggtaacat |
309 |
Q |
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|| || | |||| ||| | |||||| | |||||| ||||||| ||||| | | ||||||||| | | ||| || || | |||||||||| ||| |
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| T |
23752105 |
tttaaaatttgaaagagatgtatggatttctggagctttaagcttattttttgttaatgaacagtttgattgatatttttttcttctttgtgggtagcat |
23752204 |
T |
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| Q |
310 |
ggattcctaaggtcaatttttacaacatg |
338 |
Q |
| |
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|||||||||||||||||||| |||||||| |
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| T |
23752205 |
ggattcctaaggtcaattttaacaacatg |
23752233 |
T |
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