View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_54 (Length: 338)
Name: NF20618_high_54
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 17953752 - 17954022
Alignment:
| Q |
1 |
caagaaaagaaaaacaatgaggataataatgtcaatctgaaatgactagtctagtttgaaaaaagaataaagatatgcaaatttgtcacgacaccattca |
100 |
Q |
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| T |
17953752 |
caagaaaagaaaaacaatgaggataataatgtcaatctgaaatgactagtctagtttgaaaaaagaataaagatatgcaaatttgtcacgacaccattca |
17953851 |
T |
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| Q |
101 |
tatcattgactcaaaaatttatagtcttccctgctttaggtgtgttcattgaacaaagcctgaatccaaattaatccgtttggattggacaactttattt |
200 |
Q |
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| T |
17953852 |
tatcattgactcaaaaatttatagtcttctctgctttaggtgtgttcattgaacaaagcctgaatccaaattaatccgtttggattggacaactttattt |
17953951 |
T |
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| Q |
201 |
cttgggcataaaatcaaatcaaatcgttcaaatgcggtcttgttcgattccggcaatgaatttcatatttt |
271 |
Q |
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| T |
17953952 |
cttgggaataaaatcaaatcaaatcgttcaaatgcggtcttgttcgattctggcaatgaatttcatatttt |
17954022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 17715591 - 17715507
Alignment:
| Q |
181 |
tggattggacaactttatttcttgggcataaaatcaaatcaaatcgttcaaatgcggtcttgttcgattccggcaatgaatttca |
265 |
Q |
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| T |
17715591 |
tggattggagaactttatttcttgggcataaaatcaactcaaaccgttcaaatgccgttttgttcggttctggcaataaatttca |
17715507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 17954067 - 17954119
Alignment:
| Q |
266 |
tatttttattcatatttggatagttacaagttcaatcttgaaacccctagtct |
318 |
Q |
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| T |
17954067 |
tatttttattcatatttggatagttacaagttcaatcttgaaacccctagtct |
17954119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 19016820 - 19016736
Alignment:
| Q |
181 |
tggattggacaactttatttcttgggcataaaatcaaatcaaatcgttcaaatgcggtcttgttcgattccggcaatgaatttca |
265 |
Q |
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| T |
19016820 |
tggattggagaactttatttcttgggcataaaatcaactcaaaccgttcaaatgccgttttgttcggttctggcaataaatttca |
19016736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 17721440 - 17721376
Alignment:
| Q |
26 |
ataatgtcaatctgaaatgactagtctagtttgaaaaaagaataaagatatgcaaatttgtcacga |
91 |
Q |
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| T |
17721440 |
ataatgttaatctgaaatgactaatctagtttga-aaaagaataaagatatgcaaatatttcacga |
17721376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 19022669 - 19022605
Alignment:
| Q |
26 |
ataatgtcaatctgaaatgactagtctagtttgaaaaaagaataaagatatgcaaatttgtcacga |
91 |
Q |
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| T |
19022669 |
ataatgttaatctgaaatgactaatctagtttga-aaaagaataaagatatgcaaatatttcacga |
19022605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 19438997 - 19439037
Alignment:
| Q |
90 |
gacaccattcatatcattgactcaaaaatttatagtcttcc |
130 |
Q |
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| T |
19438997 |
gacaacattcatatcattgactccaaaatttaaagtcttcc |
19439037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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