View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_6 (Length: 740)
Name: NF20618_high_6
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 686; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 16 - 729
Target Start/End: Complemental strand, 936388 - 935675
Alignment:
| Q |
16 |
gtttgtgtatctaaaccctcctcgtcaatcattatatgtatagcatcaaatttagcatcccaggcttcattctttccgagtgagtgattcctggatgtta |
115 |
Q |
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| T |
936388 |
gtttgtgtatctaaaccctccttgtcaatcattatatgtatagcatcaaatttagcatcccaggcttcatgctttccgagtgagtgattcctggatgtta |
936289 |
T |
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| Q |
116 |
aaaaattcaaatacgcacataaacaaaaattgtgtaacttgtgtcaaaagcattgctaaaagccccataaacggctttgccttcacggcttcaccccatg |
215 |
Q |
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| T |
936288 |
agaaattcaaatacgcacataaacaaaaattctgtaacttgtgtcaaaagcattgctaaaagccccataaacggctttgccttcacggcttcaccccatg |
936189 |
T |
|
| Q |
216 |
aggaagctttctctttttgcattctactttttgctcctctggcttctcctcatgaggaagttctccctttgagttagcaatttgcggcgcttgtgaggtg |
315 |
Q |
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| T |
936188 |
aggaagctttctctttttgcattctactttttgctcctcttgcttctcctcatgaggaagctctccctttgagttagcaatttgcggcgcttgtgaggtg |
936089 |
T |
|
| Q |
316 |
gccattggggacagactatgctgttggctaagttcctttaaattccagtagaggacaactaattaaaaacggcaaactgatagaaagacaaatttcataa |
415 |
Q |
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| T |
936088 |
gccattggggacagactatgctgttggctaagttcctttaaattccagtagaggacaactaattaaaaacggcaaactgatagaaagacaaatttcataa |
935989 |
T |
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| Q |
416 |
taatgaaaataataacaataaaatcggagaacatgtatataagaaatcataagttacaacaaatttattaacagtttggttatttttgttagccaatcaa |
515 |
Q |
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| T |
935988 |
taatgaaaataataacaataaaatcggagaacatgtatataagaaatcataagttacaacaaatttattaacagtttggttatttttgttagccaatcaa |
935889 |
T |
|
| Q |
516 |
ctaaaaccctccaaaataaaagaatgaaaatacctagagcaaattatggaagaaagaaaacgaactcaatgaaactgtgatcgatgagtaatgaataacg |
615 |
Q |
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| T |
935888 |
ctaaaaccctccaaaataaaagaatgaaaatacctagagcaaattatggaagaaagaaaacgaactcaatgaaactgtgatcgatgagtaatgaataacg |
935789 |
T |
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| Q |
616 |
gcaacccttgcttgaaccaaaagtctaacaagtatatatataattaccactgatttcatgattaagaatgtaaatatgagtaatgtagatgattctatga |
715 |
Q |
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| T |
935788 |
gaaacccttgcttgaaccaaaagtctaacaagtatatatataattaccactgatttcatgattaagaatgtaaatatgagtaatgtagatgattctatga |
935689 |
T |
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| Q |
716 |
tgatcaccagaata |
729 |
Q |
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| T |
935688 |
tgatcaccagaata |
935675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 666 - 719
Target Start/End: Complemental strand, 937513 - 937460
Alignment:
| Q |
666 |
tgatttcatgattaagaatgtaaatatgagtaatgtagatgattctatgatgat |
719 |
Q |
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| T |
937513 |
tgatttcatgattaagaatgtaaatataagcaaagtagatgattctatgatgat |
937460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 663 - 721
Target Start/End: Original strand, 7584254 - 7584312
Alignment:
| Q |
663 |
cactgatttcatgattaagaatgtaaatatgagtaatgtagatgattctatgatgatca |
721 |
Q |
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| T |
7584254 |
cactgatttcatggttaagaatataaatattagtaaagtagatgattatatgatgatca |
7584312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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