View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_61 (Length: 322)
Name: NF20618_high_61
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 7858436 - 7858244
Alignment:
| Q |
113 |
ataccaaatcaaatatactgtcatcgcatgttcttatgtcaataaatgaataatacatttttggaatagtgaaagacccatcatgattaaacttctacac |
212 |
Q |
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| T |
7858436 |
ataccaaatcaaatatactgtcatcacatattcttatgtcaataaatgaataatacatttttggaatagtgaaagacccatcatgattaaacttctacac |
7858337 |
T |
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| Q |
213 |
acctgtgagcaagatatggctttgcaaatgaaaaaattgccggaacagagcctctatgtataccaaactttcagataagtagctatagaacaa |
305 |
Q |
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| T |
7858336 |
acctgtgagcaagatatggctttgcaaatgaaaatttttccggaatagagcctctatgtataccaaattttcagataagtagctataaaacaa |
7858244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 82
Target Start/End: Complemental strand, 7858497 - 7858467
Alignment:
| Q |
52 |
gctaaatcaaacatgatcaaaatatattgtc |
82 |
Q |
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| T |
7858497 |
gctaaatcaaacatgatcaaaatatattgtc |
7858467 |
T |
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