View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_63 (Length: 320)
Name: NF20618_high_63
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_63 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 38893170 - 38893472
Alignment:
| Q |
18 |
attgccacccaatgtatcagctgcggttaatggggttgctttctgtggtacacttacagggcagcttttctttggctggcttggtgataagttgggtagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38893170 |
attgccacccaatgtatcagctgcggttaatggggttgctttctgtggtacacttacagggcagcttttctttggctggcttggtgataagttgggtagg |
38893269 |
T |
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| Q |
118 |
aagaaagtgtatggtatgacactgatgataatggtaatctgctccattggttccggcctttcttttggacacaatccaaaaacggtcatggcaactcttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38893270 |
aagaaagtgtatggtatgacactgatgataatggtaatctgctccattggttccggcctttcttttggacacaatccaaaaacggtcatggcaactcttt |
38893369 |
T |
|
| Q |
218 |
gcttcttccgtttttggcttgggtttggtattggtggagactacccgctttcggctactgtaatgtcagagtattctaataagaagactcgtggtgcctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38893370 |
gcttcttccgtttttggcttgggtttggtattggtggagattacccgctttcggctactataatgtcagagtattctaataagaagactcgtggtgcctt |
38893469 |
T |
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| Q |
318 |
cat |
320 |
Q |
| |
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||| |
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| T |
38893470 |
cat |
38893472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 38883978 - 38884280
Alignment:
| Q |
18 |
attgccacccaatgtatcagctgcggttaatggggttgctttctgtggtacacttacagggcagcttttctttggctggcttggtgataagttgggtagg |
117 |
Q |
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|||||| ||||||||||||||||| || ||||| || ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||| ||| |
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| T |
38883978 |
attgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcagg |
38884077 |
T |
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| Q |
118 |
aagaaagtgtatggtatgacactgatgataatggtaatctgctccattggttccggcctttcttttggacacaatccaaaaacggtcatggcaactcttt |
217 |
Q |
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| T |
38884078 |
aaaaaagtctatggtatgaccctcatgatgatggttatctgttcaattggttctggtctttctttcggacacactccaaagtctgtcatgacaacccttt |
38884177 |
T |
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| Q |
218 |
gcttcttccgtttttggcttgggtttggtattggtggagactacccgctttcggctactgtaatgtcagagtattctaataagaagactcgtggtgcctt |
317 |
Q |
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| T |
38884178 |
gcttcttccggttctggcttgggttcggtattggtggtgactacccactttcggctaccataatgtcggagtattctaataaaaagactcgtggggcctt |
38884277 |
T |
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| Q |
318 |
cat |
320 |
Q |
| |
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||| |
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| T |
38884278 |
cat |
38884280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 305
Target Start/End: Original strand, 33109254 - 33109357
Alignment:
| Q |
202 |
gtcatggcaactctttgcttcttccgtttttggcttgggtttggtattggtggagactacccgctttcggctactgtaatgtcagagtattctaataaga |
301 |
Q |
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||||||||||| ||||| |||||| | ||||||||||| ||||| |||||||| || ||||| ||||| ||||| | ||||| |||||| | || |||| |
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| T |
33109254 |
gtcatggcaacactttgtttcttcaggttttggcttggttttggaattggtggtgattaccctctttctgctacaattatgtctgagtatgcgaacaaga |
33109353 |
T |
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| Q |
302 |
agac |
305 |
Q |
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|||| |
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| T |
33109354 |
agac |
33109357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 314
Target Start/End: Original strand, 33115278 - 33115401
Alignment:
| Q |
191 |
atccaaaaacggtcatggcaactctttgcttcttccgtttttggcttgggtttggtattggtggagactacccgctttcggctactgtaatgtcagagta |
290 |
Q |
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|||| ||||| || ||||| || ||||| |||||| | || |||||||| ||||| ||||| || || ||||| ||||| |||||| | ||||| ||||| |
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| T |
33115278 |
atcccaaaactgttatggctaccctttgtttcttcaggttctggcttggatttggaattggcggtgattaccctctttcagctactatcatgtctgagta |
33115377 |
T |
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| Q |
291 |
ttctaataagaagactcgtggtgc |
314 |
Q |
| |
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| | ||||| |||||||||||||| |
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| T |
33115378 |
tgcaaataaaaagactcgtggtgc |
33115401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 30616009 - 30615900
Alignment:
| Q |
166 |
ggttccggcctttcttttggacacaatccaaaaacggtcatggcaactctttgcttcttccgtttttggcttgggtttggtattggtggagactacccgc |
265 |
Q |
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||||| || ||||| |||||||| | ||||||| ||| ||| |||||||||||||||| | || |||||||| |||||||||||||| || || || | |
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| T |
30616009 |
ggttctggtctttcatttggacatgaaccaaaaatggtgttgggaactctttgcttcttcagattctggcttggttttggtattggtggtgattatccac |
30615910 |
T |
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| Q |
266 |
tttcggctac |
275 |
Q |
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|||| ||||| |
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| T |
30615909 |
tttctgctac |
30615900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 30620766 - 30620669
Alignment:
| Q |
160 |
tccattggttccggcctttcttttggacacaatccaaaaacggtcatggcaactctttgcttcttccgtttttggcttgggtttggtattggtggaga |
257 |
Q |
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||||| ||||| || ||||| |||||||| | |||||||| || ||| |||||||||||||||| | || |||||||| || |||||||||||||| |
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| T |
30620766 |
tccataggttctggtctttcatttggacatgaaccaaaaacagtgttgggaactctttgcttcttcagattctggcttggtttcggtattggtggaga |
30620669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 9699562 - 9699528
Alignment:
| Q |
229 |
ttttggcttgggtttggtattggtggagactaccc |
263 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
9699562 |
ttttggcttggatttggtattggtggagactaccc |
9699528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 16175205 - 16175135
Alignment:
| Q |
205 |
atggcaactctttgcttcttccgtttttggcttgggtttggtattggtggagactacccgctttcggctac |
275 |
Q |
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|||||||| ||||| ||||| | ||||||||||| |||||||||||||| || ||||| ||||| ||||| |
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| T |
16175205 |
atggcaacactttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctac |
16175135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 16184157 - 16184227
Alignment:
| Q |
205 |
atggcaactctttgcttcttccgtttttggcttgggtttggtattggtggagactacccgctttcggctac |
275 |
Q |
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|||||||| ||||| ||||| | ||||||||||| |||||||||||||| || ||||| ||||| ||||| |
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| T |
16184157 |
atggcaacactttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctac |
16184227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 16223547 - 16223617
Alignment:
| Q |
205 |
atggcaactctttgcttcttccgtttttggcttgggtttggtattggtggagactacccgctttcggctac |
275 |
Q |
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|||||||| ||||| ||||| | ||||||||||| |||||||||||||| || ||||| ||||| ||||| |
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| T |
16223547 |
atggcaacactttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctac |
16223617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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