View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_high_69 (Length: 299)

Name: NF20618_high_69
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_high_69
NF20618_high_69
[»] chr8 (25 HSPs)
chr8 (18-176)||(10291703-10291854)
chr8 (226-291)||(12710648-12710713)
chr8 (226-291)||(10896220-10896285)
chr8 (226-291)||(18726622-18726687)
chr8 (226-291)||(42755870-42755935)
chr8 (229-291)||(3050012-3050074)
chr8 (225-291)||(26601940-26602006)
chr8 (226-291)||(1554357-1554422)
chr8 (226-291)||(25837914-25837979)
chr8 (226-291)||(26062147-26062212)
chr8 (226-291)||(32660936-32661001)
chr8 (226-291)||(35818427-35818492)
chr8 (230-291)||(37392553-37392614)
chr8 (226-291)||(38132740-38132805)
chr8 (226-291)||(38364084-38364149)
chr8 (227-285)||(7931248-7931306)
chr8 (226-291)||(16313510-16313575)
chr8 (228-285)||(40197081-40197138)
chr8 (226-289)||(41228717-41228780)
chr8 (228-291)||(18298115-18298178)
chr8 (226-291)||(21137135-21137200)
chr8 (226-291)||(33444629-33444694)
chr8 (226-273)||(5020493-5020540)
chr8 (226-264)||(8635664-8635702)
chr8 (226-291)||(25899635-25899700)
[»] chr5 (19 HSPs)
chr5 (227-291)||(6091718-6091782)
chr5 (226-291)||(555709-555774)
chr5 (226-291)||(4765563-4765628)
chr5 (226-291)||(12970533-12970598)
chr5 (226-291)||(14206824-14206889)
chr5 (226-291)||(19065508-19065573)
chr5 (226-285)||(32535946-32536005)
chr5 (226-291)||(22935915-22935980)
chr5 (226-291)||(28602558-28602623)
chr5 (225-291)||(11855657-11855723)
chr5 (226-291)||(18412212-18412277)
chr5 (226-291)||(36703877-36703942)
chr5 (226-272)||(29543018-29543064)
chr5 (226-291)||(42012182-42012247)
chr5 (120-171)||(5527533-5527584)
chr5 (244-291)||(8646412-8646459)
chr5 (229-290)||(8406898-8406959)
chr5 (226-291)||(27481360-27481425)
chr5 (226-278)||(6930660-6930712)
[»] chr3 (24 HSPs)
chr3 (225-291)||(48339759-48339825)
chr3 (226-291)||(1099201-1099266)
chr3 (226-291)||(11239123-11239188)
chr3 (226-291)||(44952311-44952376)
chr3 (226-291)||(20297796-20297861)
chr3 (226-291)||(24574578-24574643)
chr3 (226-291)||(26849025-26849090)
chr3 (226-291)||(40908268-40908333)
chr3 (226-291)||(6231504-6231569)
chr3 (226-291)||(28124439-28124504)
chr3 (227-291)||(33217917-33217981)
chr3 (226-273)||(9320451-9320498)
chr3 (226-272)||(8476311-8476357)
chr3 (226-291)||(31435926-31435991)
chr3 (226-291)||(47114860-47114925)
chr3 (226-285)||(43715311-43715370)
chr3 (226-291)||(20414468-20414533)
chr3 (230-291)||(40584603-40584664)
chr3 (233-291)||(1246912-1246970)
chr3 (242-272)||(31611004-31611034)
chr3 (238-291)||(10822733-10822786)
chr3 (226-291)||(12228259-12228324)
chr3 (226-291)||(43132160-43132225)
chr3 (226-278)||(45826792-45826844)
[»] chr7 (31 HSPs)
chr7 (226-291)||(11329996-11330061)
chr7 (226-291)||(27213858-27213923)
chr7 (226-291)||(39554186-39554251)
chr7 (226-291)||(43949248-43949313)
chr7 (226-291)||(45045629-45045694)
chr7 (228-291)||(25924642-25924705)
chr7 (226-291)||(27419227-27419292)
chr7 (226-291)||(28904189-28904254)
chr7 (226-291)||(33378845-33378910)
chr7 (226-291)||(48314125-48314190)
chr7 (226-291)||(48341365-48341430)
chr7 (226-291)||(8419592-8419657)
chr7 (226-291)||(9946993-9947058)
chr7 (226-291)||(27248296-27248361)
chr7 (226-291)||(38544197-38544262)
chr7 (226-291)||(40212892-40212957)
chr7 (226-291)||(41632367-41632432)
chr7 (226-291)||(48160594-48160659)
chr7 (226-273)||(9814221-9814268)
chr7 (226-291)||(34930468-34930534)
chr7 (226-291)||(16825357-16825422)
chr7 (226-291)||(35488192-35488257)
chr7 (226-291)||(45265051-45265116)
chr7 (227-291)||(38396370-38396434)
chr7 (226-291)||(44566048-44566113)
chr7 (226-290)||(45723211-45723275)
chr7 (227-273)||(45448963-45449009)
chr7 (226-287)||(25098076-25098137)
chr7 (226-279)||(44820269-44820322)
chr7 (226-278)||(11000719-11000771)
chr7 (226-278)||(41684025-41684077)
[»] chr6 (8 HSPs)
chr6 (226-291)||(8029336-8029401)
chr6 (226-291)||(7053573-7053638)
chr6 (226-291)||(1317021-1317086)
chr6 (226-291)||(2657703-2657768)
chr6 (226-291)||(18897924-18897989)
chr6 (226-291)||(14171016-14171081)
chr6 (230-273)||(16968946-16968989)
chr6 (226-259)||(10246225-10246258)
[»] chr4 (34 HSPs)
chr4 (226-291)||(39835310-39835375)
chr4 (226-291)||(40435907-40435972)
chr4 (226-291)||(48879332-48879397)
chr4 (226-291)||(6279924-6279989)
chr4 (226-291)||(23686794-23686859)
chr4 (226-291)||(35999693-35999758)
chr4 (226-291)||(45747799-45747864)
chr4 (226-291)||(13229992-13230057)
chr4 (226-291)||(18405237-18405302)
chr4 (226-291)||(25932448-25932513)
chr4 (226-291)||(27762902-27762967)
chr4 (226-291)||(41744223-41744288)
chr4 (226-291)||(43723271-43723336)
chr4 (226-291)||(47670369-47670434)
chr4 (226-291)||(48518894-48518959)
chr4 (227-279)||(34237424-34237476)
chr4 (226-285)||(39498838-39498897)
chr4 (226-285)||(39502177-39502236)
chr4 (229-291)||(45596275-45596337)
chr4 (226-272)||(55968003-55968049)
chr4 (226-291)||(27555417-27555482)
chr4 (226-291)||(34049600-34049665)
chr4 (226-291)||(39730296-39730361)
chr4 (226-291)||(41859050-41859115)
chr4 (227-291)||(27942750-27942814)
chr4 (226-273)||(25916038-25916085)
chr4 (226-272)||(936152-936198)
chr4 (238-291)||(8322252-8322305)
chr4 (226-291)||(18931760-18931825)
chr4 (226-291)||(42773955-42774020)
chr4 (226-290)||(32953531-32953595)
chr4 (228-291)||(10400810-10400873)
chr4 (226-273)||(30415927-30415974)
chr4 (226-291)||(50672911-50672973)
[»] chr2 (36 HSPs)
chr2 (226-291)||(9733849-9733914)
chr2 (226-291)||(346348-346413)
chr2 (226-291)||(34356703-34356768)
chr2 (226-291)||(37192525-37192590)
chr2 (226-291)||(39995134-39995199)
chr2 (228-290)||(26310273-26310335)
chr2 (226-291)||(6171794-6171859)
chr2 (226-291)||(11071608-11071673)
chr2 (226-291)||(21737403-21737468)
chr2 (226-291)||(41750532-41750597)
chr2 (226-291)||(42674664-42674729)
chr2 (228-291)||(5770115-5770178)
chr2 (226-291)||(2050869-2050934)
chr2 (226-291)||(14777501-14777566)
chr2 (226-291)||(37533955-37534020)
chr2 (226-291)||(40950862-40950927)
chr2 (226-291)||(41729133-41729198)
chr2 (227-291)||(28311701-28311765)
chr2 (227-273)||(37233450-37233496)
chr2 (226-291)||(2521678-2521743)
chr2 (226-291)||(4559562-4559627)
chr2 (226-291)||(18713660-18713725)
chr2 (226-291)||(20426486-20426551)
chr2 (227-291)||(638596-638660)
chr2 (227-291)||(14832813-14832877)
chr2 (226-272)||(17966005-17966051)
chr2 (226-291)||(1988314-1988379)
chr2 (226-291)||(45409253-45409318)
chr2 (225-273)||(13760966-13761014)
chr2 (226-273)||(27357966-27358013)
chr2 (226-269)||(40570045-40570088)
chr2 (230-291)||(6571690-6571751)
chr2 (238-291)||(14253525-14253578)
chr2 (225-290)||(17542373-17542437)
chr2 (226-291)||(25455027-25455092)
chr2 (226-278)||(14403236-14403288)
[»] chr1 (34 HSPs)
chr1 (226-291)||(6978774-6978839)
chr1 (226-291)||(9115841-9115906)
chr1 (226-291)||(25789767-25789832)
chr1 (226-291)||(39930461-39930526)
chr1 (226-291)||(51445083-51445148)
chr1 (226-288)||(5806294-5806356)
chr1 (226-291)||(2430500-2430565)
chr1 (226-291)||(3572568-3572633)
chr1 (226-291)||(9831873-9831938)
chr1 (226-291)||(36361786-36361851)
chr1 (226-291)||(47037461-47037526)
chr1 (226-291)||(49822920-49822985)
chr1 (227-291)||(38964683-38964747)
chr1 (226-291)||(1597345-1597410)
chr1 (226-291)||(2632856-2632921)
chr1 (226-291)||(6911497-6911562)
chr1 (226-291)||(46666712-46666777)
chr1 (226-285)||(35187466-35187525)
chr1 (226-272)||(39329631-39329677)
chr1 (226-291)||(5518507-5518572)
chr1 (226-291)||(8332018-8332083)
chr1 (226-291)||(20260089-20260154)
chr1 (226-291)||(52630777-52630842)
chr1 (226-286)||(32202334-32202394)
chr1 (226-291)||(12190180-12190245)
chr1 (226-291)||(14788727-14788792)
chr1 (226-291)||(32824926-32824991)
chr1 (226-291)||(48916025-48916090)
chr1 (226-274)||(1007768-1007816)
chr1 (230-291)||(4683381-4683442)
chr1 (226-291)||(13931887-13931952)
chr1 (18-50)||(23654174-23654206)
chr1 (226-291)||(29091670-29091735)
chr1 (225-278)||(31806758-31806811)
[»] scaffold0006 (1 HSPs)
scaffold0006 (226-291)||(201928-201993)
[»] scaffold0189 (1 HSPs)
scaffold0189 (228-291)||(28957-29020)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 10291854 - 10291703
Alignment:
Q  18 aattgtggaaacatctatatatggtggttccaacttccaagtccaaataaatactatgtttatcgtcaacattgctatataacaacccttatcacaattt 117  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10291854 aattgtggaaacatctatatatggtggttccaa-------gtccaaataaatactatgtttatcgttaacattgctatataacaacccttatcacaattt 10291762  T
Q  118 cgtttcaccttccaatctccgccgtcgttatctcgttccgccaccgctgttcggtagat 176  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  10291761 cgtttcaccttccaatctccgccgtcgttatctcgccgcgccaccgctgttcggtagat 10291703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 12710713 - 12710648
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  12710713 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 12710648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 10896220 - 10896285
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  10896220 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgatagaaatgtatatgcctatg 10896285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 18726622 - 18726687
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  18726622 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 18726687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 42755935 - 42755870
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  42755935 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgatagaaatgtatatgcctatg 42755870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 3050074 - 3050012
Alignment:
Q  229 gtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  3050074 gtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 3050012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 26601940 - 26602006
Alignment:
Q  225 atgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  26601940 atgtgtttgtttcaaattataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 26602006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 1554357 - 1554422
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| ||||| |||||    
T  1554357 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgtctatg 1554422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 25837979 - 25837914
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| | |||||||||    
T  25837979 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtacatgcctatg 25837914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 26062212 - 26062147
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||    
T  26062212 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatattcctatg 26062147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 32660936 - 32661001
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||  |||| |||||||||||    
T  32660936 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtatatgcctatg 32661001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 35818427 - 35818492
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  35818427 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 35818492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 37392553 - 37392614
Alignment:
Q  230 tttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  37392553 tttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 37392614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 38132740 - 38132805
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||    
T  38132740 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatatgtctatg 38132805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 38364149 - 38364084
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  38364149 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 38364084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 7931306 - 7931248
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatg 285  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  7931306 gtgtttgtttcaagttataattgttgattcctgggaataaaatgatagaaatgtatatg 7931248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 16313510 - 16313575
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||  |||| |||| ||||||    
T  16313510 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatatacctatg 16313575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 40197081 - 40197138
Alignment:
Q  228 tgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatg 285  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||    
T  40197081 tgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtatatg 40197138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 41228717 - 41228780
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgccta 289  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| ||  |||| |||||||||    
T  41228717 tgtgtttgtttcaagttataattgttaattcccgggaataaaatggtaggaatgtatatgccta 41228780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 18298178 - 18298115
Alignment:
Q  228 tgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||  |||| |||| ||||||    
T  18298178 tgtttgtttcaagttataatttttgattctcgggaataaaatgataggaatgtatatacctatg 18298115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 21137135 - 21137200
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| ||||||||||| | ||||||||| ||| ||||  |||||||||||    
T  21137135 tgtgtttgtttgaagttatatttgttgattcctgagaataaaataatagaaatatatatgcctatg 21137200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 33444629 - 33444694
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| ||||||||||| | ||||||||||||| ||||  ||||| |||||    
T  33444629 tgtgtttgtttcaagttatatttgttgattcctgagaataaaatgataaaaatatatatgtctatg 33444694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 5020493 - 5020540
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    ||||||||||| |||||||| ||||||||||  |||||||||||||||    
T  5020493 tgtgtttgtttcaagttatatttgttgattcatgggaataaaatgata 5020540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 8635702 - 8635664
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaat 264  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  8635702 tgtgtttgtttcaagttataattgttgattcccaggaat 8635664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 25899700 - 25899635
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| || ||||| |||| |||||| ||||||||||| ||| |||||||| || |||||    
T  25899700 tgtgtttgtttcaaattatatttgtagattcctgggaataaaatcataaaaatgcatgtgtctatg 25899635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 6091782 - 6091718
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6091782 gtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtatatgcctatg 6091718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 555709 - 555774
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  555709 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgtctatg 555774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 4765563 - 4765628
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  4765563 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 4765628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 12970533 - 12970598
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  12970533 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 12970598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 14206824 - 14206889
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  14206824 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgatagaaatgtatatgcctatg 14206889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 19065508 - 19065573
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  19065508 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 19065573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 32536005 - 32535946
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatg 285  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  32536005 tgtgtttgttttaagttataattgttgattcccaggaataaaatgatagaaatgtatatg 32535946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 22935915 - 22935980
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  22935915 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 22935980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 28602623 - 28602558
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  28602623 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 28602558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 11855657 - 11855723
Alignment:
Q  225 atgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||||| |||||||||||||||||||| | |||||||||||||  |||| |||||||||||    
T  11855657 atgtgtttgtttcaagttataattgttgattcctgagaataaaatgataggaatgtatatgcctatg 11855723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 18412277 - 18412212
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||  |||| |||||||||||    
T  18412277 tgtgtttgtttcaagttataattattgattcctgggaataaaatgataggaatgtatatgcctatg 18412212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 36703942 - 36703877
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||  |||||||||||||||| ||||| ||||| |||||    
T  36703942 tgtgtttgtttcaagttataattgttgattatcgggaataaaatgatagaaatgtatatgtctatg 36703877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 29543018 - 29543064
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgat 272  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  29543018 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgat 29543064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 42012182 - 42012247
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||| |||| |||||||||| |||||||||||||||| |||| |||||| |||||    
T  42012182 tgtgtttgtttgaagctatatttgttgattctcgggaataaaatgatagaaatacatatgtctatg 42012247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 5527584 - 5527533
Alignment:
Q  120 tttcaccttccaatctccgccgtcgttatctcgttccgccaccgctgttcgg 171  Q
    ||||||||||||||||||||| ||||||||||||  |||||| |||||||||    
T  5527584 tttcaccttccaatctccgccatcgttatctcgtcgcgccactgctgttcgg 5527533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 8646412 - 8646459
Alignment:
Q  244 taattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||||||||||||||||||||||  |||| ||||| |||||    
T  8646412 taattgttgattcccgggaataaaatgataggaatgtatatgtctatg 8646459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 8406959 - 8406898
Alignment:
Q  229 gtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctat 290  Q
    |||||||| ||||||||||||||||||  || |||||||||||||  |||| | ||||||||    
T  8406959 gtttgtttcaagttataattgttgattttcgagaataaaatgataggaatgtacatgcctat 8406898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 27481425 - 27481360
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||| ||||||   || ||||||||||||  |||| |||||||||||    
T  27481425 tgtgtttgtttcaagttataatttttgatttttggaaataaaatgataggaatgtatatgcctatg 27481360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 6930712 - 6930660
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaat 278  Q
    ||||||| ||| |||||||| ||||||||||| | ||||||||||||| ||||    
T  6930712 tgtgtttatttcaagttatatttgttgattcctgagaataaaatgatagaaat 6930660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 48339759 - 48339825
Alignment:
Q  225 atgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  48339759 atgtgtttgtttcaagttataattgttgatttccgggaataaaatgatataaatgtatatgcctatg 48339825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 1099266 - 1099201
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||    
T  1099266 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatagaaatgtatatccctatg 1099201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 11239123 - 11239188
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  11239123 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 11239188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 44952376 - 44952311
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  44952376 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 44952311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 20297861 - 20297796
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||    
T  20297861 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtatatgcctatg 20297796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 24574643 - 24574578
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  24574643 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 24574578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 26849090 - 26849025
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  26849090 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 26849025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 40908333 - 40908268
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  40908333 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 40908268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 6231504 - 6231569
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||  |||| |||||||||||    
T  6231504 tgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtatatgcctatg 6231569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 28124439 - 28124504
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||  |||| |||||||||||    
T  28124439 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgataggaatgtatatgcctatg 28124504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 33217917 - 33217981
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||  |||| |||||||||||    
T  33217917 gtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatatgcctatg 33217981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 9320451 - 9320498
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9320451 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgata 9320498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 8476311 - 8476357
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgat 272  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  8476311 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgat 8476357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 31435926 - 31435991
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| ||||||||||| | ||||||||||||| ||||| |||||||||||    
T  31435926 tgtgtttgtttcaagttatatttgttgattcctgagaataaaatgatagaaatgtatatgcctatg 31435991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 47114860 - 47114925
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||   |||| |||||||||||    
T  47114860 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgattggaatgtatatgcctatg 47114925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 43715311 - 43715370
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatg 285  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||| ||||| |||||    
T  43715311 tgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtatatg 43715370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 20414468 - 20414533
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||   |||| |||||||||||    
T  20414468 tgtgtttgtttcaagttataattgttgatttctgggaataaaatgattggaatgtatatgcctatg 20414533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 40584664 - 40584603
Alignment:
Q  230 tttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||||||||| |||| |||||| | ||||||||| ||| ||||||||||| |||||    
T  40584664 tttgttttaagttatatttgtagattcctgagaataaaatcataaaaatgcatatgtctatg 40584603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 1246912 - 1246970
Alignment:
Q  233 gttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||| ||| |||| |||||||||| |||||||||||||||| |||| ||||||| ||||    
T  1246912 gtttgaagctatatttgttgattctcgggaataaaatgatagaaatacatatgcttatg 1246970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 272
Target Start/End: Original strand, 31611004 - 31611034
Alignment:
Q  242 tataattgttgattcccgggaataaaatgat 272  Q
    |||||||||||||||||||||||||||||||    
T  31611004 tataattgttgattcccgggaataaaatgat 31611034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 10822733 - 10822786
Alignment:
Q  238 aagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||| ||||||||| ||||||||||||||||| || || ||||| |||||    
T  10822733 aagttatatttgttgatttccgggaataaaatgatagaagtgtatatgtctatg 10822786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 12228259 - 12228324
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||||||  |||| ||||| ||||| | ||||||||||||| ||||  |||||||||||    
T  12228259 tgtgtttgttttaaaatatagttgttaattcctgcgaataaaatgatagaaatatatatgcctatg 12228324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 43132160 - 43132225
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| |||||||||| || ||||||||| |||  |||  |||||||||||    
T  43132160 tgtgtttgtttcaagttatatttgttgattctcgagaataaaataataggaatatatatgcctatg 43132225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 45826844 - 45826792
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaat 278  Q
    ||||||||||| |||||||  |||| |||||| ||||||||||||||| ||||    
T  45826844 tgtgtttgtttcaagttatcgttgtagattccagggaataaaatgatagaaat 45826792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 11330061 - 11329996
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  11330061 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 11329996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 27213858 - 27213923
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  27213858 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 27213923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 39554251 - 39554186
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  39554251 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 39554186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 43949313 - 43949248
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  43949313 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 43949248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 45045694 - 45045629
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  45045694 tgtgtttgttttaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 45045629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 25924642 - 25924705
Alignment:
Q  228 tgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  25924642 tgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 25924705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 27419227 - 27419292
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  27419227 tgtgtttgtttcaagttataattgctgattcccgggaataaaatgatagaaatgtatatgcctatg 27419292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 28904189 - 28904254
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||    
T  28904189 tgtgtttgttttaagttataattgttgattcccgagaataaaatgatagaaatgtatatgtctatg 28904254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 33378910 - 33378845
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  33378910 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 33378845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 48314190 - 48314125
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  48314190 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 48314125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 48341430 - 48341365
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  48341430 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 48341365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 8419592 - 8419657
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  8419592 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 8419657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 9946993 - 9947058
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||  |||| |||||||||||    
T  9946993 tgtgtttgtttaaagttataatttttgattcccgggaataaaatgataggaatgtatatgcctatg 9947058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 27248361 - 27248296
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  27248361 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 27248296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 38544262 - 38544197
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||  |||| |||||||||||    
T  38544262 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgataggaatgtatatgcctatg 38544197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 40212957 - 40212892
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||  |||| |||||||||||    
T  40212957 tgtgtttgtttcaagttataattgttgattcgcgggaataaaatgataggaatgtatatgcctatg 40212892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 41632367 - 41632432
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||||| ||||| |||||||||||    
T  41632367 tgtgtttgtttcaagttataattgttgattcctgagaataaaatgatagaaatgtatatgcctatg 41632432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 48160594 - 48160659
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| ||||| |||||    
T  48160594 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgtctatg 48160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 9814221 - 9814268
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9814221 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgata 9814268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 34930468 - 34930534
Alignment:
Q  226 tgtgtttgttttaa-gttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  34930468 tgtgtttgtttcaaagttataattgttgattcctgggaataaaatgatagaaatgtatatgcctatg 34930534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 16825357 - 16825422
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||| |||||  |||||||||||||| ||||| |||||||||||    
T  16825357 tgtgtttgtttcaagttataattgttaattcctaggaataaaatgatagaaatgtatatgcctatg 16825422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 35488192 - 35488257
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||   |||| |||||||||||    
T  35488192 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgattggaatgtatatgcctatg 35488257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 45265051 - 45265116
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||   |||| |||||||||||    
T  45265051 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgattggaatgtatatgcctatg 45265116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 38396370 - 38396434
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||  |||| ||||| |||||    
T  38396370 gtgtttgttccaagttataattgttgattcccgggaataaaatgataggaatgtatatgtctatg 38396434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 44566113 - 44566048
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||||||  |||| ||||| |||||    
T  44566113 tgtgtttgtttcaagttataattgttgatttccggaaataaaatgataggaatgtatatgtctatg 44566048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 45723275 - 45723211
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctat 290  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||||  |||  ||||||||||    
T  45723275 tgtgtttgtttcaagttatatttgttgattcccgagaataaaatgataggaatatatatgcctat 45723211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 45449009 - 45448963
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    |||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  45449009 gtgtttgtttcaagttataatttttgattctcgggaataaaatgata 45448963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 25098137 - 25098076
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcc 287  Q
    ||||||||||| ||||||||||| ||||||  ||||||||||||||||  |||| |||||||    
T  25098137 tgtgtttgtttcaagttataatttttgattttcgggaataaaatgataggaatgtatatgcc 25098076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 44820322 - 44820269
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatg 279  Q
    ||||||||||| ||||||||||||||||||  | |||||||||||||| |||||    
T  44820322 tgtgtttgtttcaagttataattgttgattttcaggaataaaatgatagaaatg 44820269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 11000771 - 11000719
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaat 278  Q
    ||||||||||| ||||||||  |||||||||| || |||||||||||||||||    
T  11000771 tgtgtttgtttcaagttatatatgttgattcctggaaataaaatgatataaat 11000719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 41684025 - 41684077
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaat 278  Q
    ||||||||||| |||||||| ||||||||||| | |||||| |||||| ||||    
T  41684025 tgtgtttgtttcaagttatatttgttgattcctgagaataatatgatagaaat 41684077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 8029401 - 8029336
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  8029401 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 8029336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 7053573 - 7053638
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  7053573 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 7053638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 1317086 - 1317021
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  1317086 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 1317021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 2657768 - 2657703
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||| ||||||    
T  2657768 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatacctatg 2657703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 18897989 - 18897924
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||    
T  18897989 tgtgtttgtttcaagttataattgttgattcccggaaataaagtgatagaaatgtatatgcctatg 18897924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 14171081 - 14171016
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||  |||  |||||||||||    
T  14171081 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatctatatgcctatg 14171016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 16968989 - 16968946
Alignment:
Q  230 tttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    ||||||| |||||||||||||||||||| | |||||||||||||    
T  16968989 tttgtttcaagttataattgttgattcctgagaataaaatgata 16968946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 10246225 - 10246258
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccg 259  Q
    ||||||||||| ||||||||||||||||||||||    
T  10246225 tgtgtttgtttcaagttataattgttgattcccg 10246258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 39835310 - 39835375
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  39835310 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtatatgcatatg 39835375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 40435972 - 40435907
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  40435972 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 40435907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 48879397 - 48879332
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  48879397 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 48879332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 6279924 - 6279989
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| |||||    
T  6279924 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatatgaatgtatatgtctatg 6279989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 23686859 - 23686794
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  23686859 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatatatatgcctatg 23686794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 35999758 - 35999693
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  35999758 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatatgcctatg 35999693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 45747799 - 45747864
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  45747799 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 45747864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 13229992 - 13230057
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||||| ||||| |||||||||||    
T  13229992 tgtgtttgtttcaagttataattttttattcccgggaataaaatgatagaaatgtatatgcctatg 13230057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 18405237 - 18405302
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||    
T  18405237 tgtgtttgtttcaagttataattgttgattcccgagaataaaattatagaaatgtatatgcctatg 18405302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 25932513 - 25932448
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||| ||||| |||||||||||    
T  25932513 tgtgtttgtttcaagttataattgttgattcctaggaataaaatgatagaaatgtatatgcctatg 25932448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 27762902 - 27762967
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  27762902 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 27762967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 41744223 - 41744288
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  41744223 tgtgtttatttcaagttataattgttgatttccgggaataaaatgatagaaatgtatatgcctatg 41744288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 43723336 - 43723271
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||| ||||| |||||||||||    
T  43723336 tgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtatatgcctatg 43723271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 47670434 - 47670369
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||| ||||| |||||||||||    
T  47670434 tgtgtttgtttcaagttataattgttgattcctggaaataaaatgatagaaatgtatatgcctatg 47670369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 48518894 - 48518959
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||  |||| |||||||||||    
T  48518894 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgcctatg 48518959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 34237424 - 34237476
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatg 279  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  34237424 gtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatg 34237476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 39498897 - 39498838
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatg 285  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||    
T  39498897 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtatatg 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 39502236 - 39502177
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatg 285  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||    
T  39502236 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtatatg 39502177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 45596337 - 45596275
Alignment:
Q  229 gtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||| ||||||||||||||||||  |||||||||||||||| ||||| |||||||||||    
T  45596337 gtttgtttcaagttataattgttgattttcgggaataaaatgatagaaatgtatatgcctatg 45596275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 55968003 - 55968049
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgat 272  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  55968003 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgat 55968049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 27555482 - 27555417
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||  |||| ||||| |||||    
T  27555482 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgataggaatgtatatgtctatg 27555417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 34049600 - 34049665
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||  |||| ||||| |||||    
T  34049600 tgtgtttgtttcaagttataattgttgattcccggaaataaaatgataggaatgtatatgtctatg 34049665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 39730296 - 39730361
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||  |||| ||||| |||||    
T  39730296 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtatatgtctatg 39730361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 41859050 - 41859115
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||   |||| |||||||||||    
T  41859050 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgattggaatgtatatgcctatg 41859115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 27942814 - 27942750
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||  |||| ||||| |||||    
T  27942814 gtgtttgtttcaagttataattgttgattcccggaaataaaatgataggaatgtatatgtctatg 27942750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 25916038 - 25916085
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  25916038 tgtgtttgtttcaagttataatttttgattcccgggaataaaatgata 25916085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 936198 - 936152
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgat 272  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||    
T  936198 tgtgtttgtttcaagttataattgttgattcccgagaataaaatgat 936152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 8322305 - 8322252
Alignment:
Q  238 aagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||    
T  8322305 aagttataattgttgattcctgggaataaaatgatagaaatgtatatgtctatg 8322252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 18931825 - 18931760
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||||  |||| ||||| |||||    
T  18931825 tgtgtttgtttcaagttataattgttgatttctgggaataaaatgataggaatgtatatgtctatg 18931760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 42774020 - 42773955
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||   |||| |||||||||||    
T  42774020 tgtgtttgtttcaagttataattgttgatttctgggaataaaatgattggaatgtatatgcctatg 42773955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 32953595 - 32953531
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctat 290  Q
    ||||||||| | ||||||||||||||||||||| |||| |||||||||  |||| ||||||||||    
T  32953595 tgtgtttgtctcaagttataattgttgattcccaggaacaaaatgataggaatgtatatgcctat 32953531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 10400810 - 10400873
Alignment:
Q  228 tgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||| |||||||| |||||||||   ||||||||||||||| ||||| ||||| |||||    
T  10400810 tgtttgtttcaagttatatttgttgatttttgggaataaaatgatagaaatgtatatgtctatg 10400873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 30415974 - 30415927
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    ||||||||||| |||||||| |||||||||||||  ||||||||||||    
T  30415974 tgtgtttgtttcaagttatatttgttgattcccgataataaaatgata 30415927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 50672911 - 50672973
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||  |||| ||||| |||||    
T  50672911 tgtgtttgttttaagtta--attgttgattcc-gggaataaaatgataggaatgtatatgtctatg 50672973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 9733849 - 9733914
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  9733849 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 9733914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 346348 - 346413
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  346348 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 346413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 34356703 - 34356768
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  34356703 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgtctatg 34356768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 37192590 - 37192525
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  37192590 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgtctatg 37192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 39995134 - 39995199
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  39995134 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 39995199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 26310335 - 26310273
Alignment:
Q  228 tgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctat 290  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  26310335 tgtttgtttaaagttataattgttgattcccgggaataaaatgatagaaatgtatatgtctat 26310273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 6171859 - 6171794
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||  |||| |||||||||||    
T  6171859 tgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtatatgcctatg 6171794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 11071673 - 11071608
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||  |||| |||||||||||    
T  11071673 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatatgcctatg 11071608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 21737403 - 21737468
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| ||||| |||||    
T  21737403 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgtctatg 21737468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 41750597 - 41750532
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||| ||||| |||||||||||    
T  41750597 tgtgtttgtttcaagttataattgttgattcctaggaataaaatgatagaaatgtatatgcctatg 41750532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 42674664 - 42674729
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  42674664 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 42674729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 5770115 - 5770178
Alignment:
Q  228 tgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||  |||| |||||||||||    
T  5770115 tgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtatatgcctatg 5770178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 2050934 - 2050869
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||  |||| |||| ||||||    
T  2050934 tgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtatatacctatg 2050869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 14777501 - 14777566
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  14777501 tgtgtttgtttcaatttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 14777566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 37534020 - 37533955
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||  |||| ||||| |||||    
T  37534020 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatatgtctatg 37533955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 40950862 - 40950927
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||  |||||| ||||    
T  40950862 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatatatatgcttatg 40950927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 41729133 - 41729198
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||| || |||||||||||||||||||||  |||| |||||||||||    
T  41729133 tgtgtttgtttcaagttataattttttattcccgggaataaaatgataggaatggatatgcctatg 41729198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 28311701 - 28311765
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||  |||  |||||||||||    
T  28311701 gtgtttgtttcaagttatatttgttgattcccgggaataaaatgataggaatatatatgcctatg 28311765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 37233496 - 37233450
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||    
T  37233496 gtgtttgtttcaagttatatttgttgattcccgggaataaaatgata 37233450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 2521743 - 2521678
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||   |||| |||||||||||    
T  2521743 tgtgtttgtttcaagttataattgttgattcccgaaaataaaatgattggaatgtatatgcctatg 2521678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 4559627 - 4559562
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||   |||| |||||||||||    
T  4559627 tgtgtttgtttcaagttataattgttgattcccaagaataaaatgattggaatgtatatgcctatg 4559562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 18713660 - 18713725
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| ||||||||||  || |||||||||||||||||  |||||||||||    
T  18713660 tgtgtttgtttcaagttatatttgttgattcatggtaataaaatgatataaatatatatgcctatg 18713725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 20426486 - 20426551
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||  |||  |||||||||||    
T  20426486 tgtgtttgtttcaaattatatttgttgattcccgggaataaaatgataggaatttatatgcctatg 20426551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 638660 - 638596
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||||  |||| ||||| |||||    
T  638660 gtgtttgtttcaagttataattgttgatttccggaaataaaatgataggaatgtatatgtctatg 638596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 14832877 - 14832813
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||| |||||||| |||||||||||  |||||||||||||| ||||  |||||||||||    
T  14832877 gtgtttgtttcaagttatatttgttgattcctaggaataaaatgatagaaatatatatgcctatg 14832813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 17966051 - 17966005
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgat 272  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||    
T  17966051 tgtgtttgtttcaagttataattgttgattcccgataataaaatgat 17966005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 1988379 - 1988314
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| ||||||||| | ||||||||||||||| ||||  | |||||||||    
T  1988379 tgtgtttgtttgaagttatatttgttgatttctgggaataaaatgatagaaatatacatgcctatg 1988314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 45409318 - 45409253
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| ||||||||||||  | |||||||||||  |||| |||||||||||    
T  45409318 tgtgtttgtttcaagttatatttgttgattcccaagtataaaatgataggaatgtatatgcctatg 45409253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 13761014 - 13760966
Alignment:
Q  225 atgtgtttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    |||||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  13761014 atgtgtttgtttcaagttataattattgattttcgggaataaaatgata 13760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 27357966 - 27358013
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgata 273  Q
    ||||||||||| |||||||| |||||||||||| || |||||||||||    
T  27357966 tgtgtttgtttcaagttatatttgttgattcccaggtataaaatgata 27358013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 40570088 - 40570045
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaat 269  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||    
T  40570088 tgtgtttgtttcaagttataattgtagattcctgggaataaaat 40570045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 6571751 - 6571690
Alignment:
Q  230 tttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||| |||||||| ||||||||| |||| ||||||||||||  |||  |||||||||||    
T  6571751 tttgtttaaagttatatttgttgatttccggaaataaaatgataggaatatatatgcctatg 6571690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 14253578 - 14253525
Alignment:
Q  238 aagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||| |||||||||| |||||||||||||||| ||||  ||||| |||||    
T  14253578 aagttatatttgttgattctcgggaataaaatgatagaaatatatatgtctatg 14253525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 17542437 - 17542373
Alignment:
Q  225 atgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctat 290  Q
    |||||||||||| |||||||| |||| || ||| | ||||||||| ||| ||||||||||||||||    
T  17542437 atgtgtttgttt-aagttatatttgtagagtcctgtgaataaaatcataaaaatgcatatgcctat 17542373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 25455092 - 25455027
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| |||| |||||| | ||||||||| ||| |||| |||||| |||||    
T  25455092 tgtgtttgtttcaagttatatttgtagattcctgagaataaaatcataaaaatacatatgtctatg 25455027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 14403236 - 14403288
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaat 278  Q
    ||||||||||| ||||| || ||||||||||| || |||||||||||| ||||    
T  14403236 tgtgtttgtttgaagttgtatttgttgattcctggaaataaaatgataaaaat 14403288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 6978839 - 6978774
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  6978839 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 6978774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 9115906 - 9115841
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  9115906 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 9115841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 25789832 - 25789767
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  25789832 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 25789767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 39930526 - 39930461
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  39930526 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 39930461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 51445083 - 51445148
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  51445083 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtatatacctatg 51445148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 5806294 - 5806356
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcct 288  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  5806294 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcct 5806356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 2430565 - 2430500
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  2430565 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 2430500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 3572568 - 3572633
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  3572568 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 3572633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 9831873 - 9831938
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  9831873 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgatagaaatgtatatgcctatg 9831938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 36361851 - 36361786
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  36361851 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 36361786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 47037526 - 47037461
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  47037526 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatatatatgcctatg 47037461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 49822920 - 49822985
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  49822920 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatatgcctatg 49822985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 38964683 - 38964747
Alignment:
Q  227 gtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  38964683 gtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcttatg 38964747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 1597345 - 1597410
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||  |||| |||||||||||    
T  1597345 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtatatgcctatg 1597410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 2632921 - 2632856
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||  |||| |||||||||||    
T  2632921 tgtgtttgtttcaagttataattgttgattcccgggaataaaataataggaatgtatatgcctatg 2632856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 6911562 - 6911497
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||  |||| |||||||||||    
T  6911562 tgtgtttgtttcaagttataattgttgattctcgggaataaaatgataagaatgtatatgcctatg 6911497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 46666777 - 46666712
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  46666777 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtatatgcctatg 46666712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 35187525 - 35187466
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatg 285  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  35187525 tgtgtttttttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatg 35187466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 39329677 - 39329631
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgat 272  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  39329677 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgat 39329631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 5518507 - 5518572
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||| ||||  |||||||||||    
T  5518507 tgtgtttgtttcaagttatatttgttgattcccaggaataaaatgatagaaatatatatgcctatg 5518572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 8332083 - 8332018
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||   |||| |||||||||||    
T  8332083 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgattggaatgtatatgcctatg 8332018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 20260089 - 20260154
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||   |||| |||||||||||    
T  20260089 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgattggaatgtatatgcctatg 20260154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 52630842 - 52630777
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||  |||| ||||| |||||    
T  52630842 tgtgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtatatgtctatg 52630777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 32202334 - 32202394
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgc 286  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||| ||||| ||||||    
T  32202334 tgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtatatgc 32202394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 12190180 - 12190245
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||  |||| | |||||||||    
T  12190180 tgtgtttgtttcaagttataattgttgattttcgggaataaaatgataggaatgtacatgcctatg 12190245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 14788792 - 14788727
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| |||  |||| ||||| |||||    
T  14788792 tgtgtttgtttcaagttataatttttgattcccgggaataaaataataggaatgtatatgtctatg 14788727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 32824991 - 32824926
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||||||||||||| |||| |||||||| |||  |||| |||||||||||    
T  32824991 tgtgtttgtttcaagttataattgttgatttccggaaataaaataataggaatgtatatgcctatg 32824926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 48916025 - 48916090
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||| ||| |||||||| ||||||||||| | ||||||||||||| ||||| |||||||||||    
T  48916025 tgtgtttatttcaagttatatttgttgattccagagaataaaatgatagaaatgtatatgcctatg 48916090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 1007816 - 1007768
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatat 274  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  1007816 tgtgtttgtttcaagttatatttgttgattcccgagaataaaatgatat 1007768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 4683381 - 4683442
Alignment:
Q  230 tttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||| || |||||||||||||||||| | ||||||||||||  |||| |||||||||||    
T  4683381 tttgtttcaatttataattgttgattcccagaaataaaatgataggaatgtatatgcctatg 4683442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 13931887 - 13931952
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| |||| ||||||  |||||||||| ||| |||| ||||||||||||    
T  13931887 tgtgtttgtttgaagttatatttgtagattcctaggaataaaatcataaaaatacatatgcctatg 13931952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 23654174 - 23654206
Alignment:
Q  18 aattgtggaaacatctatatatggtggttccaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  23654174 aattgtggaaacatctatatatggtggttccaa 23654206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 29091735 - 29091670
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| |||||||| ||||||||||| |  |||||||||||| ||||  ||||| |||||    
T  29091735 tgtgtttgtttcaagttatatttgttgattcctgataataaaatgataaaaatatatatgtctatg 29091670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 31806758 - 31806811
Alignment:
Q  225 atgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaat 278  Q
    |||||||||||| |||||||| |||| |||||| | ||||||||||||| ||||    
T  31806758 atgtgtttgtttcaagttatatttgtagattcctgagaataaaatgatagaaat 31806811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 201993 - 201928
Alignment:
Q  226 tgtgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  201993 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 201928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 28957 - 29020
Alignment:
Q  228 tgtttgttttaagttataattgttgattcccgggaataaaatgatataaatgcatatgcctatg 291  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||  |||| |||||||||||    
T  28957 tgtttgtttcaagttataattgttgattttcgggaataaaatgataggaatgtatatgcctatg 29020  T

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