View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_7 (Length: 710)
Name: NF20618_high_7
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 650; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 1 - 691
Target Start/End: Original strand, 3892172 - 3892861
Alignment:
| Q |
1 |
ttaaatttttatctatggatatacgttagttacataatcatgaaaaaagcactgtgatatataaaaacagttacgtgaagactcaatattggtgaagtgt |
100 |
Q |
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| T |
3892172 |
ttaaatttttatctatggatatacgttagttacataatcatgaaaaaagcactgtgatatataaaaacagttacgtgaagactcaatattggtgaagtgt |
3892271 |
T |
|
| Q |
101 |
tcctggtcaagtttcaagaagaacaaaattaaaattaacctcacaaaaaagtgtaaaacgacaagttttgaaacatgccacggttctttgaatcctaaaa |
200 |
Q |
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| T |
3892272 |
tcctggtcaagtttcaagaagaacaaaattaaaattaaactcacaaaaaagtgtaaaacgacaagttttgaaacatgccacggttctttgaatcctaaaa |
3892371 |
T |
|
| Q |
201 |
agaaatctagtatttaaggagttatgttcctcacacacaacactgtcttttcttaacaacctcaaattcctcaaaaatctttctctcttcattctttctt |
300 |
Q |
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| T |
3892372 |
agaaatctagtatttaaggagttatgttcctcacacacaacactgtcttttcttaacaacctcaaattcctcaaaaatctttctctcttcattctttctt |
3892471 |
T |
|
| Q |
301 |
ttcacttatcttctaatcatttacacacattcttagtaaaattatttgtaaccaacaaaaaatattcttctttatccttatctaatcttcttgaaaggtt |
400 |
Q |
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| T |
3892472 |
ttcacttatcttctaatcatttacacacattcttagtaaaattatttgtaaccaacaaaaaatattcttctttatccttatctaatcttcttgaaaggtt |
3892571 |
T |
|
| Q |
401 |
tgtattaaagnnnnnnnatttgagttaaaaaattcatgtattaataatattttttctaaattcatgttgattgatttctttgtttgtttttgttgttata |
500 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
3892572 |
tgtattaaagtttttttatttgagttaaaaaattcatgtattaataata-tttttctaaattcatgttgattgatttctttgtttggtcttgttgttata |
3892670 |
T |
|
| Q |
501 |
atcacaaattgaaattaatgggatttttatgtttaacttgtctgtttaatgaaacaggacttagtttaatttgtgattaattatgatggatgcaatggag |
600 |
Q |
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| T |
3892671 |
atcacaaattgaaattaatgggatttttatgtttaacttgtctgtttaatgaaacaggacttagtttaatttgtgattaattatgatggatgcaatggag |
3892770 |
T |
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| Q |
601 |
aaaaattcaagagatgttgagagtgatgaaaaatttgaattgccacctggatttaggtttcatccaacagatgaagaactcataactcatt |
691 |
Q |
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| T |
3892771 |
aaaaattcaagagatgttgagagtgatgaaaaatttgaattgccacctggatttaggtttcatccaacagatgaagaactcataactcatt |
3892861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 683
Target Start/End: Complemental strand, 31607242 - 31607205
Alignment:
| Q |
646 |
cctggatttaggtttcatccaacagatgaagaactcat |
683 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
31607242 |
cctggttttaggtttcatccaacagatgaagaactcat |
31607205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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