View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_high_70 (Length: 293)

Name: NF20618_high_70
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_high_70
NF20618_high_70
[»] chr5 (24 HSPs)
chr5 (13-163)||(5146582-5146732)
chr5 (13-163)||(33377725-33377877)
chr5 (13-167)||(6518238-6518392)
chr5 (13-163)||(35454529-35454679)
chr5 (17-163)||(13823227-13823373)
chr5 (13-150)||(228752-228889)
chr5 (13-158)||(40881905-40882048)
chr5 (180-269)||(2232874-2232963)
chr5 (10-94)||(40881822-40881906)
chr5 (77-163)||(19897305-19897391)
chr5 (13-94)||(8489158-8489239)
chr5 (13-163)||(27319558-27319696)
chr5 (98-163)||(228890-228955)
chr5 (21-69)||(19898927-19898975)
chr5 (16-70)||(791630-791684)
chr5 (16-70)||(8323880-8323934)
chr5 (16-70)||(26534670-26534724)
chr5 (16-70)||(130420-130474)
chr5 (13-55)||(35454485-35454527)
chr5 (16-70)||(42630879-42630933)
chr5 (13-50)||(14388512-14388549)
chr5 (13-49)||(19897259-19897295)
chr5 (16-55)||(130292-130331)
chr5 (16-55)||(26534544-26534583)
[»] chr6 (6 HSPs)
chr6 (13-163)||(21389056-21389206)
chr6 (13-163)||(7789749-7789899)
chr6 (13-60)||(7789701-7789748)
chr6 (16-70)||(33022340-33022394)
chr6 (13-55)||(21389209-21389251)
chr6 (16-55)||(33022202-33022241)
[»] chr3 (9 HSPs)
chr3 (13-163)||(19580389-19580539)
chr3 (17-163)||(36635317-36635463)
chr3 (13-94)||(11651035-11651116)
chr3 (16-70)||(27073080-27073134)
chr3 (16-70)||(33214481-33214535)
chr3 (16-70)||(36274157-36274211)
chr3 (16-55)||(33214626-33214665)
chr3 (17-55)||(10598847-10598885)
chr3 (17-55)||(36274312-36274350)
[»] chr1 (20 HSPs)
chr1 (13-163)||(50892998-50893148)
chr1 (13-163)||(23346454-23346604)
chr1 (13-162)||(41833909-41834058)
chr1 (26-163)||(4156972-4157109)
chr1 (13-163)||(42180651-42180801)
chr1 (13-153)||(39669149-39669287)
chr1 (13-163)||(48871327-48871466)
chr1 (13-163)||(28217609-28217748)
chr1 (13-163)||(7062042-7062179)
chr1 (17-88)||(50905032-50905103)
chr1 (16-70)||(10227750-10227804)
chr1 (16-70)||(26552164-26552218)
chr1 (13-55)||(23346608-23346650)
chr1 (13-55)||(28217564-28217606)
chr1 (117-163)||(48752532-48752578)
chr1 (13-50)||(48752586-48752623)
chr1 (16-55)||(19059412-19059451)
chr1 (13-50)||(50905104-50905141)
chr1 (17-49)||(41834069-41834101)
chr1 (17-49)||(42180609-42180641)
[»] chr8 (7 HSPs)
chr8 (13-163)||(2814323-2814473)
chr8 (10-163)||(14193355-14193508)
chr8 (13-163)||(397086-397234)
chr8 (13-163)||(41539805-41539955)
chr8 (16-70)||(37994880-37994934)
chr8 (13-55)||(14193512-14193554)
chr8 (13-43)||(41539970-41540000)
[»] chr7 (11 HSPs)
chr7 (17-163)||(7298674-7298820)
chr7 (13-163)||(40521096-40521245)
chr7 (13-163)||(46568037-46568187)
chr7 (54-163)||(16979492-16979601)
chr7 (71-163)||(47478436-47478528)
chr7 (69-163)||(28948891-28948987)
chr7 (13-50)||(46567991-46568028)
chr7 (13-55)||(16979605-16979647)
chr7 (16-70)||(19805586-19805640)
chr7 (13-55)||(28948993-28949035)
chr7 (13-49)||(40521050-40521086)
[»] chr4 (12 HSPs)
chr4 (13-163)||(18936756-18936906)
chr4 (13-163)||(37177705-37177855)
chr4 (13-163)||(11147049-11147204)
chr4 (16-70)||(3102712-3102766)
chr4 (16-70)||(40534135-40534189)
chr4 (13-63)||(18381488-18381538)
chr4 (16-70)||(9231752-9231806)
chr4 (10-55)||(11147212-11147257)
chr4 (16-55)||(9231618-9231657)
chr4 (13-43)||(5121006-5121036)
chr4 (13-55)||(18936710-18936752)
chr4 (13-55)||(40533998-40534040)
[»] chr2 (12 HSPs)
chr2 (13-163)||(38086046-38086196)
chr2 (17-163)||(3671902-3672048)
chr2 (17-163)||(31470625-31470763)
chr2 (57-138)||(15330504-15330586)
chr2 (13-70)||(42028613-42028670)
chr2 (13-60)||(15332844-15332891)
chr2 (16-70)||(2059656-2059710)
chr2 (16-70)||(13280007-13280061)
chr2 (16-70)||(16115084-16115138)
chr2 (16-70)||(31860257-31860311)
chr2 (13-43)||(3671855-3671885)
chr2 (13-43)||(38086001-38086031)
[»] scaffold0140 (2 HSPs)
scaffold0140 (49-163)||(15930-16044)
scaffold0140 (13-60)||(15882-15929)
[»] scaffold0214 (2 HSPs)
scaffold0214 (16-70)||(11664-11718)
scaffold0214 (16-55)||(11814-11853)
[»] scaffold0135 (2 HSPs)
scaffold0135 (16-70)||(37618-37672)
scaffold0135 (16-55)||(37484-37523)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 5146732 - 5146582
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  5146732 attcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaataactcctcctcctctct 5146633  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  5146632 ctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 5146582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 33377877 - 33377725
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctc--ctcctct 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||    
T  33377877 attcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaataaaaaataactgctcctctcctct 33377778  T
Q  111 ctctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  33377777 ctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 33377725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 6518238 - 6518392
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  || |||||||||||    
T  6518238 attcttacaaacaacaaattaaaacattgcatgtcattgttttattttaaaataatttggaaataatttaagaaatgaaaaataattgttcctcctctct 6518337  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaaggaaa 167  Q
    |||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  6518338 ctcaaccattatttgccgttagtattcaccaccaccaatcatggttaaaaggaaa 6518392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 35454679 - 35454529
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||| ||||||||    
T  35454679 attcttacaaacaacaaattaaaacatgacacgtcattgttttagttaaaaataatttggaaataatttaagaaatgaaaaataactgctcgtcctctct 35454580  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  35454579 ctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 35454529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 13823373 - 13823227
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctctctca 116  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||    
T  13823373 ttacaaataacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaataattgctcctcctctttctca 13823274  T
Q  117 accattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||    
T  13823273 accattatttgcacttagtattcaccaccaccaatcatggttaaaag 13823227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 228752 - 228889
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  228752 attcttataaacaataaattaaaacatgacacgttattgttttattttaaaataattaggaaataatttaagaaatgaaaactaactgctcctcctctct 228851  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaa 150  Q
    |||||||||||||| | |||  ||||||||||||||||    
T  228852 ctcaaccattatttgcggttggtattcaccaccaccaa 228889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 40882048 - 40881905
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||||||||||| ||||||||||||||||||| |||| | || |||||  |||||    
T  40882048 attcttacaaacaacaaattaaaatatgacacgttattgttttattttaaaataatttggaaataatttaagaaatggaaaacaactactcct--tctct 40881951  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggtt 158  Q
    ||||||||||| |||| |||| ||||| ||||||||||| ||||||    
T  40881950 ctcaaccattacttacggttagtattcgccaccaccaataatggtt 40881905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 2232874 - 2232963
Alignment:
Q  180 aacatttatagaaataagcatcatgtgacatgcaacgtaaatatatagtaatgcatgtattgcacactgtgttttcttattttgttaagg 269  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2232874 aacatttatagaaataagcaatatgtgaaatgcaacgtaaatatatagtaatgcatgtattgtacactgtgttttcttattttgttaagg 2232963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 40881822 - 40881906
Alignment:
Q  10 attattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaa 94  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40881822 attattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatttggaaataatttaagaaatgaaaaa 40881906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 19897391 - 19897305
Alignment:
Q  77 aatttaagaaatgaaaaatagctgctcctcctctctctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    ||||||||||||||||||||  || ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  19897391 aatttaagaaatgaaaaataaatgttcctcctctctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 19897305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 8489158 - 8489239
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaa 94  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  8489158 attcttacaaacaacaaattaaaatatgacacgtcattgttttattttaaaataatttggaaataatttaagaaatggaaaa 8489239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 27319696 - 27319558
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||||||||| |||| |  |||||||||||||||||||||            ||||||||||||||||||  |||| |||||||||    
T  27319696 attcttacaaacaacaaattaaaatatgaaacatcattgttttattttaaaata------------tttaagaaatgaaaaataattgcttctcctctct 27319609  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| ||| ||  ||||||||||||||||||||||||||||    
T  27319608 ctcaaccattatttgcagctaggattcaccaccaccaatcatggttaaaag 27319558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 228890 - 228955
Alignment:
Q  98 ctgctcctcctctctctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    ||||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||||||||    
T  228890 ctgctcctcctctctctcaaccattatttgcggttggtattcaccaccaccaatcatggttaaaag 228955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 19898975 - 19898927
Alignment:
Q  21 aaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19898975 aaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19898927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 791630 - 791684
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  791630 cttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 791684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 8323934 - 8323880
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  8323934 cttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 8323880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 26534724 - 26534670
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  26534724 cttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 26534670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 130474 - 130420
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||    
T  130474 cttacaaacaacaaattaaaacataacacgtcgttgttttcttttaaaataatta 130420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 35454485 - 35454527
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  35454485 attcttacaaacaacaaattaaaacatgacacgtcattttttt 35454527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 42630933 - 42630879
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    ||||||||||| ||||||||| |||||| ||| ||||||| ||||||||||||||    
T  42630933 cttacaaacaataaattaaaatatgacacgtcgttgttttcttttaaaataatta 42630879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 14388549 - 14388512
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcatt 50  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  14388549 attcttacaaacaacaaattaaaacatgacacgtcatt 14388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 19897259 - 19897295
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcat 49  Q
    ||||||||||||||||||||||||||||||| |||||    
T  19897259 attcttacaaacaacaaattaaaacatgacacgtcat 19897295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 130292 - 130331
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  130292 cttacaaacaacaaattaaaacatgacacgtcgttgtttt 130331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 26534544 - 26534583
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  26534544 cttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 21389056 - 21389206
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  21389056 attcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaataaatgctcctcctctct 21389155  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  21389156 ctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 21389206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 7789899 - 7789749
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  7789899 attcttacaaacaacaaattaaaacatgacacgtcattgtttttttaaaaaataattaggaaataatttaagaaataaaaaataattgctcctcctctct 7789800  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  7789799 ctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 7789749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 7789701 - 7789748
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttatttt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7789701 attcttacaaacaacaaattaaaacatgacatgtcattgttttttttt 7789748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 33022394 - 33022340
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  33022394 cttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 33022340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 21389251 - 21389209
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  21389251 attcttacaaacaacaaattaaaacatgacacgtcattttttt 21389209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 33022202 - 33022241
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  33022202 cttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 19580539 - 19580389
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| | |||||||||||||||    
T  19580539 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattttaaaataatttaagaaatgaaaaacaactgctcctcctctct 19580440  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  19580439 ctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 19580389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 36635463 - 36635317
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctctctca 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  36635463 ttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaataactgcttctcctctttctca 36635364  T
Q  117 accattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||    
T  36635363 accattatttgcacttagtattcaccaccaccaatcatggttaaaag 36635317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 11651035 - 11651116
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaa 94  Q
    ||||||||||||||||| |||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  11651035 attcttacaaacaacaatttaaaatatgatatatcattgttttattttaaaataatttggaaataatttaagaaatggaaaa 11651116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 27073134 - 27073080
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  27073134 cttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 27073080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 33214481 - 33214535
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  33214481 cttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 33214535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 36274157 - 36274211
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  36274157 cttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 36274211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 33214665 - 33214626
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  33214665 cttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 10598847 - 10598885
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  10598847 ttacaaacaacaaattaaaacatgacacgtcgttgtttt 10598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 36274350 - 36274312
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  36274350 ttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 50892998 - 50893148
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  50892998 attcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaataactgcttctcctctct 50893097  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| | |||| |||||||||||| ||||||||||||||||    
T  50893098 ctcaaccattatttgcggttagtattcaccaccatcaatcatggttaaaag 50893148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 23346454 - 23346604
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  23346454 attcttacaaacaataaattaaaacatgacacgtcatttttttattttaaaataatttggaaataatttaagaaatgaaaaataactgctactcctctct 23346553  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  23346554 ctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 23346604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 41833909 - 41834058
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41833909 attcttacacacaacaaattaaaacatgacacgtcattattttattttaaaataattaggaaataatttaagaaatgaaaaataactgctcctcctctct 41834008  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaa 162  Q
    |||||||||||||| |||| | |||||||||  | |||||||||||||||    
T  41834009 ctcaaccattatttgcagtcagtattcaccattatcaatcatggttaaaa 41834058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 4157109 - 4156972
Alignment:
Q  26 acaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctctctcaaccattatt 125  Q
    ||||| ||||||||  || ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4157109 acaaagtaaaacattgcacgtcattgttttattttaaaataatttggaaataatttaagaaatgaaaaataactgctcctcctctctctcaaccattatt 4157010  T
Q  126 tacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    | |||||| |||||||||||||||||||||||||||||    
T  4157009 tgcagttagtattcaccaccaccaatcatggttaaaag 4156972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 42180801 - 42180651
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||    
T  42180801 attcttacaaacaacaaactaaaacatgacacatcattattttattttaaaataattagaaaataatttaagaaatgaaaaataactgctcctcctttct 42180702  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| | || | |||||||||| ||||||||||||||||||    
T  42180701 ctcaaccattatttgcggtcagtattcaccactaccaatcatggttaaaag 42180651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 39669287 - 39669149
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  |    
T  39669287 attcttacaaagaacaaattaaaacatgacacgttattgttttattttaaaataattaggaaataatttaggaaatgaaaaataactgctcctcctc--t 39669190  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatca 153  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  39669189 ctcaaccattatttgcggttaatattcaccaccatcaatca 39669149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 48871466 - 48871327
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||||||||           |||||||||||||||| |||||||||||||||    
T  48871466 attcttacaaacaacaaattaaaacattgcacgtcattgttttattttaaaataatt-----------taagaaatgaaaaataactgctcctcctctct 48871378  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  48871377 ctcaactattatttgcagttaatattcaccaccaccaatcatggttaaaag 48871327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 28217748 - 28217609
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||           ||||||||||||||||  ||||||||||||||    
T  28217748 attcttacaaacaacaaatcaaaacatgacacatcattgttttattttaaaataatt-----------taagaaatgaaaaataattgctcctcctctct 28217660  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  28217659 ctcaaccattatttgcagttactattcaccaccaccaatcatggttaaaag 28217609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 7062042 - 7062179
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||           |||||||||||||||| |||||||||||||      
T  7062042 attcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatt-----------taagaaatgaaaaataactgctcctcctct-- 7062128  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||||    
T  7062129 ctcaaccattatttgcagttagtattcaccaccatcaatcatggttaaaag 7062179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 50905032 - 50905103
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaat 88  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  50905032 ttacaaacaacaagttaaaacatgacacgtcattgttttattttaaaattatttggaaataatttaagaaat 50905103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 10227750 - 10227804
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  10227750 cttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 10227804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 26552218 - 26552164
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    ||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||    
T  26552218 cttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 26552164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 23346650 - 23346608
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  23346650 attcttacaaacaataaattaaaacatgacatgtcattttttt 23346608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 28217564 - 28217606
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  28217564 attcttacaaacaacaaattaaaacatgacacgtcattttttt 28217606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 48752532 - 48752578
Alignment:
Q  117 accattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||    
T  48752532 accattatttgcagttagtattcaccaccaccaatcatgattaaaag 48752578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 48752623 - 48752586
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcatt 50  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  48752623 attcttacaaacaacaaattaaaacatgacacgtcatt 48752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 19059412 - 19059451
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  19059412 cttacaaacaacaaattaaaacatgacacgtcgttgtttt 19059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 50905141 - 50905104
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcatt 50  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  50905141 attcttacaaacaacaaattaaaacatgatacgtcatt 50905104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 41834101 - 41834069
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcat 49  Q
    ||||||||||||||||||||||||||| |||||    
T  41834101 ttacaaacaacaaattaaaacatgacacgtcat 41834069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 42180609 - 42180641
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcat 49  Q
    ||||||||||||||||||||||||||| |||||    
T  42180609 ttacaaacaacaaattaaaacatgacacgtcat 42180641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 2814473 - 2814323
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  2814473 attcttacaaacaacaaattaaaacatgacacgtcattgttttttttaaaaataattaggaaataatttaagaaatgaaaaataattgctcctcctctct 2814374  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| | |||| |||||||||||||||||||||||||||||    
T  2814373 ctcaaccattatttgcggttagtattcaccaccaccaatcatggttaaaag 2814323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 14193355 - 14193508
Alignment:
Q  10 attattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctc 109  Q
    |||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||  || ||||||||    
T  14193355 attatttttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatttggaaataatttaagaaatgaaaaataattgttcctcctc 14193454  T
Q  110 tctctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  14193455 tctctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 14193508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 397234 - 397086
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |    
T  397234 attcttataaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaataactgctcctcctc--t 397137  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| | |||| |||||||||||||||||||||||||||||    
T  397136 ctcaaccattatttgcggttagtattcaccaccaccaatcatggttaaaag 397086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 41539805 - 41539955
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||| ||||||    
T  41539805 attcttacaaacaacaaattaaaatatgacacgtcgttgttttattttaaaataattttgaaataatttaagaaatgaaaaataactgttccttctctct 41539904  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  41539905 ctcaaccattatttgcagttagtattcaccaccaccaatcatgattaaaag 41539955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 37994934 - 37994880
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    ||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||    
T  37994934 cttacaaacaataaattaaaacatgacacgtcgttgttttcttttaaaataatta 37994880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 14193554 - 14193512
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  14193554 attcttacaaacaacaaattaaaacatgacacgtcattttttt 14193512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 41540000 - 41539970
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgaca 43  Q
    |||||||||||||||||||||||||||||||    
T  41540000 attcttacaaacaacaaattaaaacatgaca 41539970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 7298674 - 7298820
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctctctca 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||    
T  7298674 ttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattagaaaataatttaagaaatgaaaaataactgctcctcctctttctca 7298773  T
Q  117 accattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||    
T  7298774 accattatttgcacttagtattcaccaccaccaatcatggttaaaag 7298820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 40521245 - 40521096
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  40521245 attcttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataattaggaaataatttaataaatg-aaaataactgctcctcctctct 40521147  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| | |||| |||||||||| ||||||||||||||||||    
T  40521146 ctcaaccattatttgcggttagtattcaccactaccaatcatggttaaaag 40521096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 46568187 - 46568037
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  46568187 attcttacaaacaacaaattaaaacatgacacatcattgttttatttaaaaataattaggaaataatttaataaatgaaaaataactgctcctcctctct 46568088  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||| | |||||| ||||||| |||||||||||| ||||||||    
T  46568087 ctcaaccattatctgcagttagtattcactaccaccaatcatagttaaaag 46568037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 16979492 - 16979601
Alignment:
Q  54 ttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctctctcaaccattatttacagttaatattcaccaccaccaatca 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |    
T  16979492 ttattttaaaataatttggaaataatttaagaaatgaaaaataactgctcctcctctctctcaaccattatctgcagttagtattcaccaccaccaatta 16979591  T
Q  154 tggttaaaag 163  Q
    ||||||||||    
T  16979592 tggttaaaag 16979601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 47478528 - 47478436
Alignment:
Q  71 ggaaataatttaagaaatgaaaaatagctgctcctcctctctctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||    
T  47478528 ggaaataatttaagaaatgaaaaataattgctcctcctctctctcaaccattatttgcagttagtattcaccaccatcaatcatggttaaaag 47478436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 28948891 - 28948987
Alignment:
Q  69 taggaaataatttaagaaatgaaaaatagctgctcctcctctctctc--aaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| | |||| |||||||||||||||||||||||||||||    
T  28948891 taggaaataatttaagaaatgaaaaataactgctcctcctctctctctgaaccattatttgcggttagtattcaccaccaccaatcatggttaaaag 28948987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 46567991 - 46568028
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcatt 50  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  46567991 attcttacaaacaacaaattaaaacatgacacgtcatt 46568028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 16979647 - 16979605
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||    
T  16979647 attcttacaaataacaaattaaaacatgacacgtcattttttt 16979605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 19805640 - 19805586
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||| ||| ||||||||||||||||||| ||| ||| ||| ||||||||||||||    
T  19805640 cttataaataacaaattaaaacatgacacgtcgttgctttcttttaaaataatta 19805586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 28949035 - 28948993
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||| |||||||||||||||| |||||| ||||    
T  28949035 attcttacaaacaataaattaaaacatgacacgtcattttttt 28948993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 40521050 - 40521086
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcat 49  Q
    |||||||||||||||||||||||| |||||| |||||    
T  40521050 attcttacaaacaacaaattaaaatatgacacgtcat 40521086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 18936906 - 18936756
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  18936906 attcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatttggaaataatttaagaaatgaaaaataactgctcctcctctct 18936807  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    ||| |||||||||| |||||| ||||||||||||||||||||| |||||||    
T  18936806 ctcgaccattatttgcagttagtattcaccaccaccaatcatgattaaaag 18936756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 37177855 - 37177705
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||    
T  37177855 attcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatttggaaataatttaagaaatgaaaaataacagctcctcctctct 37177756  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||| |||||||||||||||  |||||||    
T  37177755 ctcaaccattatttgcagttagtatttaccaccaccaatcataattaaaag 37177705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 11147049 - 11147204
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgaca-----tgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcc 107  Q
    |||||||||||||||||||||||||||||||     |||||||||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||||    
T  11147049 attcttacaaacaacaaattaaaacatgacacgtcttgtcattgttttattttaaaataatttggaaataatttaagaaaggaaaaataaatgctcctcc 11147148  T
Q  108 tctctctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||    
T  11147149 tctctctcaaccattatttgctgttagtattcaccaccaccaatcatggttaaaag 11147204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 3102766 - 3102712
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  3102766 cttacaaacaacaaattaaaacatgacacgtcgttgtttttttttaaaataatta 3102712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 40534189 - 40534135
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  40534189 cttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 40534135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 18381538 - 18381488
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaa 63  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  18381538 attcttacaagcaacaaattaaaacatgacacatcattgttttattttaaa 18381488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 9231806 - 9231752
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||  | ||| ||||||| ||||||||||||||    
T  9231806 cttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataatta 9231752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 11147257 - 11147212
Alignment:
Q  10 attattcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  11147257 attattcttacaaacaataaattaaaatatgacatgtcattttttt 11147212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 9231618 - 9231657
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  9231618 cttacaaacaacaaattaaaacatgacacgtcgttgtttt 9231657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 5121036 - 5121006
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgaca 43  Q
    |||||||||||||||||||||||||||||||    
T  5121036 attcttacaaacaacaaattaaaacatgaca 5121006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 18936710 - 18936752
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||||||||||||||||||||| | |||||| ||||    
T  18936710 attcttacaaacaacaaattaaaacatgatacgtcattttttt 18936752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 40533998 - 40534040
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    ||||||||||||||||||||||||||||| | ||| |||||||    
T  40533998 attcttacaaacaacaaattaaaacatgatacgtcgttgtttt 40534040  T

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Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 38086196 - 38086046
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctct 112  Q
    |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  38086196 attcttacaaacaacaaattaaaatatgatacgtcattgttttattttaaaataattttgaaataatttaagaaatgaaaaataactgctcctcctctct 38086097  T
Q  113 ctcaaccattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  38086096 ctcaaccattatttgcagttagtattcaccaccaccaatcatggttaaaag 38086046  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 3672048 - 3671902
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctctctca 116  Q
    ||||||| |||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  3672048 ttacaaataacaaattaaaatataacacgtcattgttttattttaaaataatttggaaataatttaagaaatgaaaaataactgctcctcctctctctca 3671949  T
Q  117 accattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    ||||||||||   |||| |||||||||||| ||||||||||||||||    
T  3671948 accattatttgtggttactattcaccaccatcaatcatggttaaaag 3671902  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 31470625 - 31470763
Alignment:
Q  17 ttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctctctca 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||    
T  31470625 ttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattaggaaataatttaagaaatgaaaaataattgcttctcctctctctca 31470724  T
Q  117 accattatttacagttaatattcaccaccaccaatcatggttaaaag 163  Q
    |||||| |||        |||||||||||||||||||||||||||||    
T  31470725 accattgttt--------tattcaccaccaccaatcatggttaaaag 31470763  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 15330586 - 15330504
Alignment:
Q  57 ttttaaaataattaggaaataatttaagaaatgaaaaat-agctgctcctcctctctctcaaccattatttacagttaatatt 138  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| ||||    
T  15330586 ttttaaaataattaggaaataatttaagaaatgaaaaataaactgctcctcctctctctcaaccattatttgcagttagtatt 15330504  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 42028613 - 42028670
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  42028613 attcttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 42028670  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 15332891 - 15332844
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttatttt 60  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  15332891 attcttacaaacaataaattaaaacatgacacgtcattgttttatttt 15332844  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 2059710 - 2059656
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    ||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||    
T  2059710 cttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 2059656  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 13280061 - 13280007
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||    
T  13280061 cttacaaacaacaaattaaaacatgatacgtcgttgttttcttttaaaataatta 13280007  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 16115084 - 16115138
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    ||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||    
T  16115084 cttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 16115138  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 31860311 - 31860257
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    ||||||||||||||||||||||||||||  || ||||||| ||||||||||||||    
T  31860311 cttacaaacaacaaattaaaacatgacacatcgttgttttcttttaaaataatta 31860257  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 3671855 - 3671885
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgaca 43  Q
    |||||||||||||||||||||||||||||||    
T  3671855 attcttacaaacaacaaattaaaacatgaca 3671885  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 38086001 - 38086031
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgaca 43  Q
    |||||||||||||||||||||||||||||||    
T  38086001 attcttacaaacaacaaattaaaacatgaca 38086031  T

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Target: scaffold0140 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 16044 - 15930
Alignment:
Q  49 ttgttttattttaaaataattaggaaataatttaagaaatgaaaaatagctgctcctcctctctctcaaccattatttacagttaatattcaccaccacc 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||| |||    
T  16044 ttgttttattttaaaataattaggaaataatttaagaaatgaaaaataactgctactcctctctctcaaccattatttgcggttaatattcaccactacc 15945  T
Q  149 aatcatggttaaaag 163  Q
    |||||||||||||||    
T  15944 aatcatggttaaaag 15930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 15882 - 15929
Alignment:
Q  13 attcttacaaacaacaaattaaaacatgacatgtcattgttttatttt 60  Q
    ||||||||||||||||||||||||||||||| || ||| |||| ||||    
T  15882 attcttacaaacaacaaattaaaacatgacacgttattattttttttt 15929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 11664 - 11718
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    ||||||||||||||||||||| ||||||  |||||||||| ||||||||||||||    
T  11664 cttacaaacaacaaattaaaatatgacacatcattgttttcttttaaaataatta 11718  T

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Target: scaffold0214; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 11853 - 11814
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  11853 cttacaaacaacaaattaaaacatgacacgtcgttgtttt 11814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 37672 - 37618
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatta 70  Q
    |||||||||||||||||||||||||  | ||| ||||||| ||||||||||||||    
T  37672 cttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataatta 37618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 37484 - 37523
Alignment:
Q  16 cttacaaacaacaaattaaaacatgacatgtcattgtttt 55  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  37484 cttacaaacaacaaattaaaacatgacacgtcgttgtttt 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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