View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20618_high_78 (Length: 273)
Name: NF20618_high_78
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_78 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 51962114 - 51962369
Alignment:
| Q |
18 |
gaaataatatacatgaggttggtactagctagtttcctcttacaaaaataaatcacaaaaaagatctatttctagttgtttgtatgaatttcagaaaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51962114 |
gaaataatatacatgaggttggtactagctagtttcctcttacaaaaataaatcacaaaaaagatctatttctagttgtttgtatgaatttcagaaaata |
51962213 |
T |
|
| Q |
118 |
aagaagacctacaaagtgggcaagagaattgacttcgttcaagccattgctcaatgcaattaaaatgaaacacatgcccacatctcctcaacttgctcac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51962214 |
aagaagacctacaaagtgggcaagagaattgacttcgttcaagccattgattaatgcaattaaaatgaaacacatgcccacatctcctcaacttgctcac |
51962313 |
T |
|
| Q |
218 |
tccatcttccctctcaaactcaactaaacaaatggaacaaatctcatcttcatctc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51962314 |
tccatcttccctctcaaactcaactaaacaaatggaacaaatctcatcttcatctc |
51962369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University