View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_high_8 (Length: 702)

Name: NF20618_high_8
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_high_8
NF20618_high_8
[»] chr2 (1 HSPs)
chr2 (1-682)||(1839294-1839981)


Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 682
Target Start/End: Original strand, 1839294 - 1839981
Alignment:
Q  1 ttaacccaaaaggcataaccaaaaactgagtcaaaaagcttgttnnnnnnntactattttgggtcaaaaaactttaggccgggaagagtagagtctagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||||||    
T  1839294 ttaacccaaaaggcataaccaaaaactgagtcaaaaagcttgttaaaa----aatattttgggtcaaaaaactttaggccgggaagagtagagtctagtc 1839389  T
Q  101 atagtcaaattggaatgccagactacataaccgccatcctctcattcattggataaagactaaattaatcatcaacattt--attaatataattctttca 198  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  1839390 atagtcaaattggaatgccagactacataaccgccatcctc--attcattggataaagactaaattaatcatcaacatttttattaatataattctttca 1839487  T
Q  199 cgttgggacttttgttttggttgacaaattcacgttgggctcttatttgcccatcattttttccattgcgacttgcgacctatgcacacatcacagaaat 298  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  1839488 cgttgggacttttgttttggttgacaaattcacgttggggtcttatttgcccataattttttccattgcgatttgcgacctatgcacacatcacagaaat 1839587  T
Q  299 tagtactatatttttgtatacacgcacgcatacgccattgcttacaccacgttccctactcatcaataatttggtaccccgcaatataaattgtttt--- 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  1839588 tagtactatatttttgtatacacgcacgcatacgccattgcttacaccacgttccctactcatcaataatttggtaccccgcaatataaattgttttaaa 1839687  T
Q  396 cnnnnnnnntatgtgtacttgaatttaatggaaggttatttatattttgattatttacgtaaatgttt-ttaaacaaaatattagagcataaaaatcatg 494  Q
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  1839688 aaaaatatatatgtgtacttgaatttaatggaaggttatttatattttgattatttacgtaaatgtttgttaaacaaaatattagagcattaaaatcatg 1839787  T
Q  495 gttgaggtag-nnnnnnnntgcagccttttatgttaagagctctatannnnnnnnnnnnnnnngaggaaagagagctctatattt-----gatgagataa 588  Q
    ||||||||||         ||||||||||||||||||||||||||||                ||||||||||||||||||||||     ||||||||||    
T  1839788 gttgaggtagaaaaaaaaatgcagccttttatgttaagagctctatattttgtttttgtttttgaggaaagagagctctatatttgatgagatgagataa 1839887  T
Q  589 aatccaaatataagtttataagtgagaacaatcattactttataagttgattttggaaggttgaattaaacctaactcaaatattaagataata 682  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1839888 aatccaaatataagtttataagtgagaacaatcatttctttataagttgattttggaaggttaaattaaacctaactcaaatattaagataata 1839981  T

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