View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_high_94 (Length: 234)
Name: NF20618_high_94
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_high_94 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 24860628 - 24860839
Alignment:
| Q |
11 |
tcataataagtgtgagcggaaagtctaatcatatatattcgacgatcaatcggtaaaagaaacaaaaatctctttgataaccattacgatgcactctatt |
110 |
Q |
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| T |
24860628 |
tcataatgagtgtgagcagaaagtctaatcatatatattcgacgatcaatcggtaaaagaaacaaaaatctctttgataaccattacgatgcactctatt |
24860727 |
T |
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| Q |
111 |
aatttatttaatacatgttttatcaaacaataagtaaataaattacccctccttcatca-tacaaggatttacatagnnnnnnnaattacatgaagtcat |
209 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
24860728 |
aattaatttaatacatgttttatcaaacaataagtaaataaattacccctccttcatcagtacaaggatttacatagtttttttaattacatgaagtcat |
24860827 |
T |
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| Q |
210 |
gaatgaactttt |
221 |
Q |
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|||||||||||| |
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| T |
24860828 |
gaatgaactttt |
24860839 |
T |
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