View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_10 (Length: 646)
Name: NF20618_low_10
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Complemental strand, 11034075 - 11033602
Alignment:
| Q |
20 |
ttgatctgtggtggtactttgagggtgacaaaaccaaatgactaagagacggtacattgaagcaaccacaaatgcagctgaacccacgacaataagtagg |
119 |
Q |
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| T |
11034075 |
ttgatctgtggtggtactttgagggtgacaaaaccaaatgactaagacacggtacattgaagcaaccacaaatgcagctgaacccacgacaataagtagt |
11033976 |
T |
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| Q |
120 |
acaataaagttcttataaaaaggatggtcaccatcatcatctgccatgatcaatgatcatgtgaagctatgatcatgtgaagctagagagaaagaaataa |
219 |
Q |
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| T |
11033975 |
acaatagagttcttataaaaaggatggtcaccatcatcatctgccatgatcaatgatcatgtgaa----------------gctagagagaaagaaataa |
11033892 |
T |
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| Q |
220 |
atggtaacagtgatgttaattgaaccttataagtgacaagccggctaatgacgaatgaagctttcattatcaaagtttatgacccgttttcttggtttga |
319 |
Q |
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| T |
11033891 |
atggtaacagtgatat-aattgaaccttataagtgacaagccggctaatgacgaatgaagctttcattatcaaagtttatgacccgttttcttggtttga |
11033793 |
T |
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| Q |
320 |
tcacaatggaaacaaaaatgtggttactggttgattaattaattacaattgataaacataccnnnnnnnnnnnncatacaaacaaaagcagatgtgcaat |
419 |
Q |
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| T |
11033792 |
tcacaatggaaacaaaaatgtggttactggttcattaattaattacaattgataaacataccaaaaaaaacaaacacacaaacaaaagcagatgtgcaat |
11033693 |
T |
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| Q |
420 |
aaggataatattcttttctctaatagagtacttgaaaataacattaccaccttccgtgtgttttacttcaataaaagtggcaatgaagagtataaatta |
518 |
Q |
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| T |
11033692 |
aaggataatattcttttctc--------tacttgaaagtaacatcaccaccttccgtgtgttttacttcaataaaagtggcaatgaagagtataaatta |
11033602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 510 - 633
Target Start/End: Complemental strand, 11027028 - 11026905
Alignment:
| Q |
510 |
tataaattaagctcttgtagaattaaaccacttgcagtaaaagtttctttgtttattttattaactgagtgaaaattttacttgtgaactttttaatagt |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11027028 |
tataaattaagctcttgtagaattaaaccacttgcagtaaaagtttctctgtttattttattaactgagtgaaaattttacttgtgaactttttaatagt |
11026929 |
T |
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| Q |
610 |
aaatacaaggactttttaatagta |
633 |
Q |
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| T |
11026928 |
aaatacaaggactttttaatagta |
11026905 |
T |
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