View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_101 (Length: 214)
Name: NF20618_low_101
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_101 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 1345162 - 1345345
Alignment:
| Q |
10 |
attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt |
109 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1345162 |
attatattaaacatgcatgcttttaaaacagtcctgcactgaggagaccattttctatctaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt |
1345261 |
T |
|
| Q |
110 |
ttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacaca |
193 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1345262 |
ttatgtttataatagagagcagccagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacaca |
1345345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 31136180 - 31135997
Alignment:
| Q |
10 |
attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt |
109 |
Q |
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|||||| |||||| ||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
31136180 |
attatattaaacatgcaagcttttagaacagtcctgcactgaggagaccagtttctatccaaaatcttcaaaaaatcaaaacagttggtgaattatatgt |
31136081 |
T |
|
| Q |
110 |
ttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacaca |
193 |
Q |
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||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
31136080 |
ttatgtttatagtagagagcaaccagttccacagatgcatagcaaaagaccactcaaaaaataagtggaaggtagattcacaca |
31135997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 7577956 - 7577785
Alignment:
| Q |
19 |
aacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgtttatgttta |
118 |
Q |
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|||| ||||||||| | || ||||||||||| ||||||| ||||| ||||||| |||||||| |||| ||| || |||||||||||||| |||| |
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| T |
7577956 |
aacatgcatgctttcaggacggtcctgcactgcggagaccagtttctctccaaaagattcaaaaagtcaagacacgtgataaattgcatgtttatattta |
7577857 |
T |
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| Q |
119 |
taatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcac |
190 |
Q |
| |
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|| ||||| || | || |||||||||||||||||||| || |||||||| ||||||||||||| ||||| |
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| T |
7577856 |
aaaaagagaacaacccgtaccacaaatgcatagcaaaaggacattcaaaaaataagtggaaggtagtttcac |
7577785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 14722722 - 14722539
Alignment:
| Q |
10 |
attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt |
109 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||| | |
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| T |
14722722 |
attatattaaacatgcatgcttttaaaacagtcctgcactgaagagaccaatttctatccaaaattttcaaaaaatcaaaacagttggtgaactgcattt |
14722623 |
T |
|
| Q |
110 |
ttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacaca |
193 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14722622 |
ttatgtttataatagagagaagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacaca |
14722539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 28185128 - 28185299
Alignment:
| Q |
19 |
aacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgtttatgttta |
118 |
Q |
| |
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|||| ||| ||||| | ||||||||||||| | ||||||| |||||||| | ||||||| |||| || | ||| ||| |||||||||| ||||||| |
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| T |
28185128 |
aacatgcaagctttgagaacagtcctgcaccgcggagaccaatttctatctagaatcttccaaaagtctagacaattgctgaattgcatgcttatgttag |
28185227 |
T |
|
| Q |
119 |
taatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcac |
190 |
Q |
| |
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||||| ||| || || |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |
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| T |
28185228 |
taatatagaacaaccaattccacaaatgcatagcaaaaggacactcaaaaaacaagtggaaagtagtttcac |
28185299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 12219281 - 12219431
Alignment:
| Q |
40 |
gtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgtttatgtttataatagagagcagtcagttcc |
139 |
Q |
| |
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||||||||||| || |||| ||||| ||||||| |||||||| |||| ||| || |||||||||||||| |||| |||||||| || ||||||| |
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| T |
12219281 |
gtcctgcactgcggataccagtttctctccaaaagattcaaaaagtcaagacacgtgataaattgcatgtttatatttaaaatagagaacaaccagttcc |
12219380 |
T |
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| Q |
140 |
acaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcac |
190 |
Q |
| |
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|||||||||||||||||| || |||||||| ||||||||||||| ||||| |
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| T |
12219381 |
acaaatgcatagcaaaaggacattcaaaaaataagtggaaggtagtttcac |
12219431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 34661231 - 34661047
Alignment:
| Q |
10 |
attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaa-tcaaaacagttggcgaattgcatg |
108 |
Q |
| |
|
|||||| |||||| ||| ||||||| ||||||||| |||| | ||||||| |||||||||||||||||||||||| |||||||| |||| |||||| ||| |
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| T |
34661231 |
attatattaaacatgcaagcttttagaacagtcctacactaaggagaccagtttctatccaaaatcttcaaaaaaatcaaaacaattggtgaattgtatg |
34661132 |
T |
|
| Q |
109 |
tttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacaca |
193 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34661131 |
tttatgtttatagtagagagcaaccagttccacagatgcatagcaaaagagcactcaaaaaataagtggaaggtagattcacaca |
34661047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 18254289 - 18254338
Alignment:
| Q |
10 |
attatactaaacaagcatgcttttaaaacagtcctgcactgaagagacca |
59 |
Q |
| |
|
|||||| | |||| ||| |||||||||||||||||||||||| ||||||| |
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| T |
18254289 |
attatattgaacatgcaagcttttaaaacagtcctgcactgaggagacca |
18254338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 7705157 - 7704989
Alignment:
| Q |
10 |
attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt |
109 |
Q |
| |
|
|||||| |||||| ||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||| |
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| T |
7705157 |
attatattaaacatgcaagcttttagaacagtcctgcactgaggagaccggtttctatccaaaatcttcaaaaaatcagaacagttggtgaattttgtgt |
7705058 |
T |
|
| Q |
110 |
ttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtgga |
178 |
Q |
| |
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||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||| |
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|
| T |
7705057 |
ttatgtttataatagagagcaaccagttccatagatgcatagcaaaagagcactcaaaaaataagtgga |
7704989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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