View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_102 (Length: 214)
Name: NF20618_low_102
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_102 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36861 - 36752
Alignment:
| Q |
1 |
atacttgttactgtacttgatatttttggaatggtacttcgagtctaatttaaaatcctttggatgcattattcctacttgtcgcgtcatacacaacccc |
100 |
Q |
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| T |
36861 |
atacttgttactgtacttgatatttttggaatggtacttcgagtctaatgtaaaatcctctgga-acattattcctacttgtcgcgtcatacacaa-ccc |
36764 |
T |
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| Q |
101 |
cttttgactaaa |
112 |
Q |
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|||||||||||| |
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| T |
36763 |
cttttgactaaa |
36752 |
T |
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Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 3165794 - 3165687
Alignment:
| Q |
3 |
acttgttactgtacttgatatttttggaatggtacttcgagtctaatttaaaatcctttggatgcattattcctacttgtcgcgtcatacacaaccccct |
102 |
Q |
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| T |
3165794 |
acttgttactatacttgatatttgtggaatggtacttcgagtctaatgtaaaatcctctgga-acattattcctacttgtcgcgtcatacacaa-cccct |
3165697 |
T |
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| Q |
103 |
tttgactaaa |
112 |
Q |
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| T |
3165696 |
tttgactaaa |
3165687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 52421861 - 52421897
Alignment:
| Q |
114 |
tgaactggttttcaaaatagttaactgttttgattaa |
150 |
Q |
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| T |
52421861 |
tgaactggttttcaaaatagttaactgttttgattaa |
52421897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 38256023 - 38256060
Alignment:
| Q |
114 |
tgaactggttttcaaaatagttaactgttttgattaat |
151 |
Q |
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| T |
38256023 |
tgaactggttttcaaaatagttaacttttttgattaat |
38256060 |
T |
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