View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_103 (Length: 212)
Name: NF20618_low_103
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_103 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 52107896 - 52108097
Alignment:
| Q |
1 |
ataagtgaagtattctggaaactccacaagctcttttacaggtctccccatctcacttttgaagaagtaataactgttcttcatgagctcaactcgcagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52107896 |
ataagtgaagtattctggaaactccacaagctcttttacaggtctccccatctcacttttgaagaagtaataactgttcttcatgagctcaactcgcagc |
52107995 |
T |
|
| Q |
101 |
gcaaccaattgaggacacttgatcaccatactagccacattctgcgacggtattgccctaccaagtaaaaactcaaccggtttcataatcacattttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52107996 |
gcaaccaattgaggacacttgatcaccatactagccacatcctgcgacggtattgccctaccaagtaaaaactcaaccggtttcataatcacattttgat |
52108095 |
T |
|
| Q |
201 |
ga |
202 |
Q |
| |
|
|| |
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|
| T |
52108096 |
ga |
52108097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 44519169 - 44519370
Alignment:
| Q |
1 |
ataagtgaagtattctggaaactccacaagctcttttacaggtctccccatctcacttttgaagaagtaataactgttcttcatgagctcaactcgcagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44519169 |
ataagtgaagtattctggaaactccacaagctcttttacgggcctccccatctcacgtttgaagaagtaataattgttcttcatgagctcaactcgcagc |
44519268 |
T |
|
| Q |
101 |
gcaaccaattgaggacacttgatcaccatactagccacattctgcgacggtattgccctaccaagtaaaaactcaaccggtttcataatcacattttgat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||| |||||||| |||||||| |||| |
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| T |
44519269 |
gcaatcaattgaggacacttgatcaccatactagccacatcctgcaacggtattgccctaccgagtaagaactcaactggtttcatgatcacattctgat |
44519368 |
T |
|
| Q |
201 |
ga |
202 |
Q |
| |
|
|| |
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|
| T |
44519369 |
ga |
44519370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 44518440 - 44518537
Alignment:
| Q |
1 |
ataagtgaagtattctggaaactccacaagctcttttacaggtctccccatctcacttttgaagaagtaataactgttcttcatgagctcaactcgca |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44518440 |
ataagtgaagtattctggaaactccacaagctcttttacgggcctcccaatctcacttttgaagaagtaataactgttcttcatgagctcaactcgca |
44518537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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