View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_11 (Length: 603)
Name: NF20618_low_11
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 12 - 587
Target Start/End: Original strand, 43796171 - 43796740
Alignment:
| Q |
12 |
atagggctagttttgataaagatcataagcatgatcatgagaatacccatgaagagtcagaaaagagggcgaaaaggtcagcttgttctctatcaagtga |
111 |
Q |
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| T |
43796171 |
atagggctagttttgataaagatagtaagcatggttttgagaacacctgtgaagagtcggaaaagaggataaagaggtcttttagttctctatcaagtga |
43796270 |
T |
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| Q |
112 |
tgaagatgatgctaaggatgaggcttctgttcaagaatctactcatcagtgcaatgtttgtggaaaaacttttagcaatggaaaagcattgggtggccac |
211 |
Q |
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| T |
43796271 |
tgaagatgatgctaaggatgaggtttctatcccagaa------cacgaatgtaatatctgtggaaaaacttttagcaacggaaaagcattgggtggccac |
43796364 |
T |
|
| Q |
212 |
cggagatctcactttcttaagaagaaactaaatcatcatccacaaaaggtaagaagccctttttcaatacaaggtaataataatagggctagttttgatg |
311 |
Q |
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| T |
43796365 |
cggagatctcactttcttaagaagaaactaaatcatcatccacaaaaggtaaaaagccctttttcaatacaaggtaataataatagggctagttttgatg |
43796464 |
T |
|
| Q |
312 |
attatgatgatgaagaagaaattggtggcataaagaaaccgatcaagaaaccaacttgttctatctgcgagaagaagtttccaaccaagaatgctttgta |
411 |
Q |
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| T |
43796465 |
attatgatgatgaagaagaaattggtggcataaagaaaccgatcaagaaaccaacttgttctatctgcgagaagaagtttccaaccaagaatgctttgta |
43796564 |
T |
|
| Q |
412 |
tggtcacatgaggtctcacccgaatagagattttaaaggacttaatcctcccactgaatatcataaagaagatcaagatgatggtgatttatctttgcca |
511 |
Q |
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| T |
43796565 |
tggtcacatgaggtctcacccgaatagagattttaaaggacttaatcctcccactgaatatcataaagaagatcaagatgatggtgatttatctttgcca |
43796664 |
T |
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| Q |
512 |
aaatggcagaagagagatagaagaggtagaaagtgtattggtagtgtcgaggcggctgcaaatcttttgcaccttc |
587 |
Q |
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| T |
43796665 |
aaatggcagaagagagatagaagaggtagaaagtgtattggtagtgtcgaggcggctgcaaatcttttgcaccttc |
43796740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 26 - 310
Target Start/End: Original strand, 43795900 - 43796187
Alignment:
| Q |
26 |
gataaagatcataagcatgatcatgagaatacccatgaagagtcagaaaagagggcgaaaaggtcagcttgttctctatcaagtgatgaagatgatg--- |
122 |
Q |
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| T |
43795900 |
gataaagatcataagcatggttacgagaaaccctacgaagattcagaaaagaggatgaaaaggtcttcttcttcactatcaagtgatgaagaagatgata |
43795999 |
T |
|
| Q |
123 |
ctaaggatgaggcttctgttcaagaatctactcatcagtgcaatgtttgtggaaaaacttttagcaatggaaaagcattgggtggccaccggagatctca |
222 |
Q |
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| T |
43796000 |
ctaaggatgaggtttctattcaggaatctacacatcaatgcaatgtttgtggaaaaacttttagcaatggaaaagcgttgggcggtcaccgcagatctca |
43796099 |
T |
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| Q |
223 |
ctttcttaagaagaaactaaatcatcatccacaaaaggtaagaagccctttttcaatacaaggtaataataatagggctagttttgat |
310 |
Q |
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| T |
43796100 |
ctttcttaaaaagaaacttaatcatcgttcacaaaaggtaaaaacccctctctcaatacaaggtagttataatagggctagttttgat |
43796187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 28847414 - 28847348
Alignment:
| Q |
356 |
aagaaaccaacttgttctatctgcgagaagaagtttccaaccaagaatgctttgtatggtcacatga |
422 |
Q |
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| T |
28847414 |
aagaaacaaacttgttatatttgcgagaacaagtttccaatcaagaatgttttttatggtcacatga |
28847348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 28847559 - 28847477
Alignment:
| Q |
169 |
ttgtggaaaaacttttagcaatggaaaagcattgggtggccaccggagatctcactttcttaagaagaaactaaatcatcatc |
251 |
Q |
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| T |
28847559 |
ttgtggtaagactttcagcaatggaaaaacattaggtggtcaccgaagatctcactttctcaagatgaagcgtaatcatcatc |
28847477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 172 - 305
Target Start/End: Original strand, 29130956 - 29131089
Alignment:
| Q |
172 |
tggaaaaacttttagcaatggaaaagcattgggtggccaccggagatctcactttcttaagaagaaactaaatcatcatccacaaaaggtaagaagccct |
271 |
Q |
| |
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|||||||| |||| ||| |||||||||||| ||| ||||| |||||||||||||||||| | ||||| ||||| || | |||||||| || |||| |
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| T |
29130956 |
tggaaaaaaatttaacaacggaaaagcattgaatggtcaccgaagatctcactttcttaagcataaacttcatcattattcccaaaaggtggaaacccct |
29131055 |
T |
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| Q |
272 |
ttttcaatacaaggtaataataatagggctagtt |
305 |
Q |
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| T |
29131056 |
ttctcaatacaataaaataataatatggcaagtt |
29131089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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