View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_12 (Length: 598)

Name: NF20618_low_12
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_low_12
NF20618_low_12
[»] chr4 (15 HSPs)
chr4 (10-581)||(46428177-46428743)
chr4 (20-273)||(46015825-46016078)
chr4 (10-220)||(46027860-46028069)
chr4 (89-426)||(46020784-46021109)
chr4 (92-221)||(46015351-46015479)
chr4 (92-220)||(46020583-46020710)
chr4 (28-220)||(46303777-46303970)
chr4 (37-220)||(46021197-46021381)
chr4 (92-220)||(46246223-46246350)
chr4 (358-422)||(46015607-46015672)
chr4 (122-214)||(41074446-41074537)
chr4 (20-54)||(46028345-46028379)
chr4 (356-422)||(46304065-46304130)
chr4 (119-211)||(14320585-14320676)
chr4 (119-211)||(14321753-14321844)
[»] chr8 (4 HSPs)
chr8 (114-220)||(4522907-4523012)
chr8 (94-220)||(4525280-4525403)
chr8 (355-415)||(4525565-4525626)
chr8 (352-417)||(4522771-4522837)
[»] chr1 (9 HSPs)
chr1 (19-220)||(3802180-3802384)
chr1 (83-220)||(3802619-3802752)
chr1 (59-174)||(3801740-3801857)
chr1 (42-143)||(3804128-3804229)
chr1 (119-273)||(50668519-50668681)
chr1 (103-215)||(50668040-50668152)
chr1 (20-76)||(3803594-3803650)
chr1 (41-88)||(50669223-50669270)
chr1 (352-408)||(50667472-50667529)
[»] chr3 (1 HSPs)
chr3 (121-200)||(52806350-52806429)
[»] scaffold0384 (1 HSPs)
scaffold0384 (117-203)||(5721-5806)
[»] scaffold0079 (1 HSPs)
scaffold0079 (117-189)||(7947-8018)


Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 10 - 581
Target Start/End: Original strand, 46428177 - 46428743
Alignment:
Q  10 gcacagagcgaaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428177 gcacagagcgaaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgt 46428276  T
Q  110 ccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttct---tgattgagt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  46428277 ccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttctaattgattgagt 46428376  T
Q  207 gttaatatggacatgtgtttatcttgccattgttgccaggcttgggaaattcaacccatttcattctattttttcctatgcatgtcttctatttttctgt 306  Q
    |        |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46428377 g--------gacatgtgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctattttttcctatgcatgtcttctatttttctgt 46428468  T
Q  307 ggctgttgtgcgttgtcttttttcttctccttttctctttaacagtttcagccatattaaaataacctcacccttcatttcttaattgatcaaaacatta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428469 ggctgttgtgcgttgtcttttttcttctccttttctctttaacagtttcagccatattaaaataacctcacccttcatttcttaattgatcaaaacatta 46428568  T
Q  407 aacagaatttggtaagaagcttcgtggaaattaccagcagactcctcttttgatgtacaggaaccgaaagggactagttcagagctataatactatatat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428569 aacagaatttggtaagaagcttcgtggaaattaccagcagactcctcttttgatgtacaggaaccgaaagggactagttcagagctataatactatatat 46428668  T
Q  507 aatgagaatggcgattgtgttactactccctatgtgtttgattgtgacaccatgcgtattgttaaggcaagttct 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428669 aatgagaatggcgattgtgttactactccctatgtgtttgattgtgacaccatgcgtattgttaaggcaagttct 46428743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 46015825 - 46016078
Alignment:
Q  20 aaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgtta 119  Q
    |||| ||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  46015825 aaaaagagcaagtaagttttactcaatgctgtaatgatgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgtta 46015924  T
Q  120 tgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatggaca 219  Q
    |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  46015925 tgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatacaca 46016024  T
Q  220 tgtgtttatcttgccattgttgccaggcttgggaaattcaacccatttcattct 273  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46016025 tatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 46016078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 46027860 - 46028069
Alignment:
Q  10 gcacagagcgaaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgt 109  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46027860 gcacagtgcgaagaggagaaagtaagttttactcaatgctgtaatggtgtattgatatgttctttgcagttaaattaatttaggttaacatgtacttcgt 46027959  T
Q  110 ccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgtt 209  Q
    ||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  46027960 ccatctgttatgatttaaattttgacttt-aaactatgtgaagatacaattatttttgctttcctgtttttatgaagatgcaagttcttgtttgagtgtt 46028058  T
Q  210 aatatggacat 220  Q
    |||||| ||||    
T  46028059 aatatgcacat 46028069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 89 - 426
Target Start/End: Original strand, 46020784 - 46021109
Alignment:
Q  89 ttgggttaacatgtacttcgt---ccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatt------tttgctttcctgtttt 179  Q
    ||||||||||||||||| | |   ||| |||||||||||||| ||||||||||||||||||| |||||||||||||||      |  | |||||||||||    
T  46020784 ttgggttaacatgtactacttgatccatctgttatgatttacgttttgactttaaaactatgtgaagatacaattattcacaaataagttttcctgtttt 46020883  T
Q  180 tatgaaaatgcaagttcttgattgagtgttaatatggacatgtgtttatcttgccattgttgccaggcttgggaaattcaacccatttcattctattttt 279  Q
     |||||||| |||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||| ||||||||||||| |||||||||||||          
T  46020884 -atgaaaatccaagttcttgattgagtgttaaaatgcacatatgtctatcttgccgttgttgccagacttgggaaattcagcccatttcattct------ 46020976  T
Q  280 tcctatgcatgtcttctatttttctgtggctgttgtgcgttgtcttttttcttctccttttctctttaacagtttcagccatattaaaataacctcaccc 379  Q
      ||||   | ||| ||||        |||||||||| |||||||||||| ||||   ||||| ||||||| ||||||||||||||||||||||||| ||    
T  46020977 --ctat---tatctcctat--------ggctgttgtgtgttgtctttttttttctttctttctttttaacactttcagccatattaaaataacctca-cc 46021062  T
Q  380 ttcatttcttaattgatcaaaacattaaacagaatttggtaagaagc 426  Q
    ||||||||||| || || |||||||||||||||||||||||||||||    
T  46021063 ttcatttcttatttcataaaaacattaaacagaatttggtaagaagc 46021109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 46015351 - 46015479
Alignment:
Q  92 ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca 191  Q
    |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| ||| ||||||| |||| || ||| ||||||| |||||||||||||||    
T  46015351 ggttaacatgcacttcatccatctgttatgatgtacattttgagtttaaaaccatgtgaagataaaattcttgttgttttcctg-ttttatgaaaatgca 46015449  T
Q  192 agttcttgattgagtgttaatatggacatg 221  Q
    |  ||||||||||||||||||||| |||||    
T  46015450 acctcttgattgagtgttaatatgcacatg 46015479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 46020583 - 46020710
Alignment:
Q  92 ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca 191  Q
    |||||||||| ||||  |||| |||||||||||||| || ||| |||||||| ||| |||||||||||| |||||| |||||| ||||||||||||||||    
T  46020583 ggttaacatgcacttaatccatctgttatgatttaccttatgagtttaaaaccatgtgaagatacaattctttttgttttcct-tttttatgaaaatgca 46020681  T
Q  192 agttcttgattgagtgttaatatggacat 220  Q
    |  ||||||||||||||||||||| ||||    
T  46020682 acctcttgattgagtgttaatatgcacat 46020710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 46303970 - 46303777
Alignment:
Q  28 aaagtaagttttact-caatgctgtaatggtatattgatatgttctttgcagttaaattaatttggg-ttaacatgtacttcgtccaactgttatgattt 125  Q
    ||||||||||||||| ||||| ||| |||   |||| | ||||||||||| || ||||||  ||||| |||||||| | ||| |||| ||||||||||||    
T  46303970 aaagtaagttttacttcaatgttgtgatgtcgtattaacatgttctttgctgtgaaattagcttggggttaacatgcatttcatccatctgttatgattt 46303871  T
Q  126 acattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatggacat 220  Q
    | |||||||||||||||||||| ||||| |||||| ||| |||||||||  |||||| | |||||||| ||||||||  ||||||||||| ||||    
T  46303870 agattttgactttaaaactatgtgaagacacaattctttatgctttcct-attttattacaatgcaagctcttgattttgtgttaatatgcacat 46303777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 46021197 - 46021381
Alignment:
Q  37 tttactcaatgctgtaatg--gtat--attgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgttatgatttacatttt 132  Q
    |||||||||||||||||||  ||||  ||| |||| || |||||||||||||||||||| ||||||||| ||| | |||| ||||||||||||| |  ||    
T  46021197 tttactcaatgctgtaatgttgtattaattaatatattatttgcagttaaattaatttgagttaacatgcactccatccatctgttatgatttaga--tt 46021294  T
Q  133 gactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatggacat 220  Q
    ||||||||||  ||  ||||| |||||| ||| |||||||||| ||||||  ||||||||  |||||||||| |||||||||| ||||    
T  46021295 gactttaaaatcatttgaagacacaattctttctgctttcctg-ttttatagaaatgcaacctcttgattgaatgttaatatgcacat 46021381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 46246350 - 46246223
Alignment:
Q  92 ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca 191  Q
    |||||||||| ||||  |||| |||||||||||||| || | | ||||||||  || |||||||||||| |||||  |||||| ||||||||||||||||    
T  46246350 ggttaacatgcacttaatccatctgttatgatttaccttataagtttaaaaccttgtgaagatacaattcttttttttttcct-tttttatgaaaatgca 46246252  T
Q  192 agttcttgattgagtgttaatatggacat 220  Q
    |  |||||||||| |||||||||| ||||    
T  46246251 acctcttgattgaatgttaatatgcacat 46246223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 358 - 422
Target Start/End: Original strand, 46015607 - 46015672
Alignment:
Q  358 ccatattaaaataacctcaccctt-catttcttaattgatcaaaacattaaacagaatttggtaag 422  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||    
T  46015607 ccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaag 46015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 41074446 - 41074537
Alignment:
Q  122 atttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatat 214  Q
    ||||| |||||||||||||||| ||| |||||||||||| ||||||||||  || ||||| |||||||| || |||||||| |||||||||||    
T  41074446 atttagattttgactttaaaaccatgtgaagatacaattctttttgctttaatg-ttttaagaaaatgctaggtcttgatttagtgttaatat 41074537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 46028345 - 46028379
Alignment:
Q  20 aaaaggagaaagtaagttttactcaatgctgtaat 54  Q
    |||||||||||||||||||||||||||||||||||    
T  46028345 aaaaggagaaagtaagttttactcaatgctgtaat 46028379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 46304130 - 46304065
Alignment:
Q  356 agccatattaaaataacctcacccttcatttcttaattgatcaaaacattaaacagaatttggtaag 422  Q
    |||| ||||||||||| |||||||||  ||||||||||||||||||||| || ||||||||| ||||    
T  46304130 agccgtattaaaataatctcacccttg-tttcttaattgatcaaaacataaatcagaatttgctaag 46304065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 14320585 - 14320676
Alignment:
Q  119 atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaa 211  Q
    |||||||| || || ||| || ||| ||| ||||||||||||  ||||||||||||| |||||||| |||||||  || ||||||| ||||||    
T  14320585 atgatttagatattaactgtagaaccatgtgaagatacaattcattttgctttcctg-ttttatgagaatgcaatctcatgattgattgttaa 14320676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 14321753 - 14321844
Alignment:
Q  119 atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaa 211  Q
    |||||||| || || ||| || ||| ||| ||||||||||||  ||||||||||||| ||| ||||||||||||  || ||||||| ||||||    
T  14321753 atgatttagatattaactgtagaaccatgggaagatacaattcattttgctttcctg-tttcatgaaaatgcaatctcatgattgattgttaa 14321844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 4523012 - 4522907
Alignment:
Q  114 ctgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaata 213  Q
    ||||||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||| |    
T  4523012 ctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttttgctttcctg-ttttatgaaaattcaagctcttgattgagtgttaaaa 4522914  T
Q  214 tggacat 220  Q
    || ||||    
T  4522913 tgcacat 4522907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 4525403 - 4525280
Alignment:
Q  94 ttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaag 193  Q
    |||| ||| ||||| |||| |||||||||| ||  ||||||||||||||| ||| |||||  ||||| ||||||||||| |||||| |||||||  ||||    
T  4525403 ttaaaatgcacttcatccatctgttatgatctaggttttgactttaaaaccatgtgaaga--caattctttttgctttcttgtttt-atgaaaaatcaag 4525307  T
Q  194 ttcttgattgagtgttaatatggacat 220  Q
     ||||||||||||||||||||| ||||    
T  4525306 ctcttgattgagtgttaatatgcacat 4525280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 4525626 - 4525565
Alignment:
Q  355 cagccatattaaaataacctcaccctt-catttcttaattgatcaaaacattaaacagaatt 415  Q
    |||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  4525626 cagccatattaaaacaacctcaccctttcatttcttatttgataaaaacattaaacagaatt 4525565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 4522837 - 4522771
Alignment:
Q  352 tttcagccatattaaaataacctcacccttca-tttcttaattgatcaaaacattaaacagaatttg 417  Q
    ||||| |||||||||||| | |||||||||   ||||||| |||||||||| |||||||||||||||    
T  4522837 tttcatccatattaaaatgatctcacccttttgtttcttatttgatcaaaatattaaacagaatttg 4522771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 3802384 - 3802180
Alignment:
Q  19 gaaaaggagaaagtaagttttactcaatgctgtaatg-gta--tattg---atatgttctttgcagttaaattaatttgggttaacatgtacttcgtcca 112  Q
    ||||||||||||||||||||||||||||||||||||  | |  | |||   |||||||  |||| |||||||||||||||  ||| ||| | ||| | ||    
T  3802384 gaaaaggagaaagtaagttttactcaatgctgtaatttgcacttcttgtcaatatgtt--ttgcggttaaattaatttggcgtaatatgcatttctttca 3802287  T
Q  113 actgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaat 212  Q
      |||||||||||| |||| ||||||||||| ||| |||| |||||||| ||||||||||||  |||||||||||| |||  ||||| ||||||||||||    
T  3802286 tatgttatgatttagatttcgactttaaaaccatgtgaagctacaattagttttgctttcct-attttatgaaaatacaacctcttgtttgagtgttaat 3802188  T
Q  213 atggacat 220  Q
    ||| ||||    
T  3802187 atgcacat 3802180  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 3802752 - 3802619
Alignment:
Q  83 attaatttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttat 182  Q
    ||||||||||| || |||| ||||| ||||  ||||||   ||| |||||||||||||||  ||| ||||||||||||  ||||| |||||| |||| ||    
T  3802752 attaatttgggctagcatgcacttcttccatttgttat---ttagattttgactttaaaatcatgtgaagatacaattcgttttgttttcctatttt-at 3802657  T
Q  183 gaaaatgcaagttcttgattgagtgttaatatggacat 220  Q
    ||||||||||  ||||||||||||||||||||| ||||    
T  3802656 gaaaatgcaacctcttgattgagtgttaatatgcacat 3802619  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 3801857 - 3801740
Alignment:
Q  59 tattgatatgttctttgcagttaaattaatttgggtt--aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatac 156  Q
    |||| ||| |||||||||||| |||||| |||||| |  |||||| | ||| |||| ||||||||||||| |||||||||||||||| ||| ||||| ||    
T  3801857 tattaatacgttctttgcagtgaaattagtttggggttaaacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtgaagacac 3801758  T
Q  157 aattatttttgctttcct 174  Q
    |||| ||| |||||||||    
T  3801757 aattctttatgctttcct 3801740  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 3804229 - 3804128
Alignment:
Q  42 tcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaa 141  Q
    |||||| ||| ||| | |||| |||||||||||||  | || ||| |||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||    
T  3804229 tcaatgttgtgatgttgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgactttaaa 3804130  T
Q  142 ac 143  Q
    ||    
T  3804129 ac 3804128  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 119 - 273
Target Start/End: Original strand, 50668519 - 50668681
Alignment:
Q  119 atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatggac 218  Q
    |||||||| |||||||||||| ||  ||| ||| ||| |||| |||||||||| ||| ||| ||||||||||||| ||||||| ||||||||||||| ||    
T  50668519 atgatttagattttgactttagaagcatgtgaaaatagaattctttttgctttactgcttt-atgaaaatgcaagctcttgatcgagtgttaatatgcac 50668617  T
Q  219 a---------tgtgtttatcttgccattgttgccaggcttgggaaattcaacccatttcattct 273  Q
    |         | |||||||||||| ||||||| ||| ||||| ||||| | |||||||||||||    
T  50668618 ataagttggttatgtttatcttgctattgttgtcagacttggaaaattgagcccatttcattct 50668681  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 50668040 - 50668152
Alignment:
Q  103 acttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaa-ttatttttgctttcctgtttttatgaaaatgcaagttcttgat 201  Q
    ||||||||||  ||| |||||||| |||||||||||| ||| ||| |||||||||| || |||||||||  |||  |||||||||||||||| |||| ||    
T  50668040 acttcgtccatatgtcatgatttaaattttgactttagaaccatgtgaagatacaatttttttttgcttcactg-ctttatgaaaatgcaagctcttaat 50668138  T
Q  202 tgagtgttaatatg 215  Q
    ||| ||||||||||    
T  50668139 tgaatgttaatatg 50668152  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 3803650 - 3803594
Alignment:
Q  20 aaaaggagaaagtaagttttactcaatgctgtaatggtatattgatatgttctttgc 76  Q
    ||||||||||||||||||||||||||||| |||||| | || |  ||||||||||||    
T  3803650 aaaaggagaaagtaagttttactcaatgccgtaatgttgtaatactatgttctttgc 3803594  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 50669223 - 50669270
Alignment:
Q  41 ctcaatgctgtaatggtatattgatatgttctttgcagttaaattaat 88  Q
    ||||||||||||||| | ||||||| |||||||||||||| |||||||    
T  50669223 ctcaatgctgtaatgttctattgatgtgttctttgcagttgaattaat 50669270  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 50667472 - 50667529
Alignment:
Q  352 tttcagccatattaaaataacctcacccttc-atttcttaattgatcaaaacattaaa 408  Q
    |||||||||| |||||||| ||||||||||  |||||||| |||||||||||| ||||    
T  50667472 tttcagccatgttaaaatatcctcaccctttgatttcttatttgatcaaaacaataaa 50667529  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 52806429 - 52806350
Alignment:
Q  121 gatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttga 200  Q
    |||||| |||||||||||| ||| ||| |||||| ||||| ||||| ||||| |||||||||||| ||| ||| ||||||    
T  52806429 gatttagattttgactttagaacaatgtgaagatgcaattcttttttctttcttgtttttatgaacatggaagctcttga 52806350  T

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Target: scaffold0384 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 5806 - 5721
Alignment:
Q  117 ttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattg 203  Q
    ||||||||||||| ||||||||| |||| || | |||||||||| |||||| |||| || ||||||||||||| ||  |||||||||    
T  5806 ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaatgaaaactcttgattg 5721  T

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Target: scaffold0079 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 8018 - 7947
Alignment:
Q  117 ttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatg 189  Q
    ||||||||||||| ||||||||| |||| || | |||||||||| |||||| |||| || |||||||||||||    
T  8018 ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaatg 7947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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