View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20618_low_14 (Length: 552)
Name: NF20618_low_14
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_14 |
 | |
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| [»] scaffold0391 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 33950543 - 33951058
Alignment:
| Q |
1 |
aaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33950543 |
aaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttaatgatgtcttgaacaaaatatctcaa |
33950642 |
T |
|
| Q |
101 |
attcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33950643 |
attcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatg |
33950742 |
T |
|
| Q |
201 |
atcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatgattcctatgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
33950743 |
atcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgagaatgattcctatgg |
33950842 |
T |
|
| Q |
301 |
ctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaatttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
33950843 |
ctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaaccatg-------- |
33950934 |
T |
|
| Q |
401 |
gtacacaaattcaatgaagatggacaactttttaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatagcatttagcaagt |
500 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
33950935 |
-------aattcaatgaagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactgttgggttggatataccatttagcaagt |
33951027 |
T |
|
| Q |
501 |
tgaaaatggagcttctgaggggtggtagctc |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
33951028 |
tgaaaatggagcttctgaggggtggtagctc |
33951058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 531
Target Start/End: Original strand, 33990025 - 33990543
Alignment:
| Q |
4 |
cagaagaaggaatctcaaattcatgagtagcgc---tacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33990025 |
cagaggaaggaatctcaaattcatgagtagcgccactacacatattattacccttacaacaagatttca------tgatgtcttgaacaaaatatctcaa |
33990118 |
T |
|
| Q |
101 |
attcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatg |
200 |
Q |
| |
|
|| || ||| ||||| |||| |||||||| |||||| || ||||||| |||||| ||||||||| ||| || || ||||| |||||||||||||||| |
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|
| T |
33990119 |
atagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaatg |
33990218 |
T |
|
| Q |
201 |
atcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatgattcctatgg |
300 |
Q |
| |
|
| ||||||||||| |||||||||||||| || | ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33990219 |
aacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctat-- |
33990316 |
T |
|
| Q |
301 |
ctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaatttt |
400 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| |||| |
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|
| T |
33990317 |
----gttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaactttt |
33990412 |
T |
|
| Q |
401 |
gtacacaaattcaatgaagatggacaactttttaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatagcatttagcaagt |
500 |
Q |
| |
|
| ||||||||||||||||| | || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
33990413 |
gaacacaaattcaatgaagctaaaccacctttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagt |
33990512 |
T |
|
| Q |
501 |
tgaaaatggagcttctgaggggtggtagctc |
531 |
Q |
| |
|
|||||||||||||| | |||| ||||||||| |
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|
| T |
33990513 |
tgaaaatggagcttataagggatggtagctc |
33990543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 157 - 397
Target Start/End: Original strand, 33959346 - 33959580
Alignment:
| Q |
157 |
aaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgca |
256 |
Q |
| |
|
||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
33959346 |
aaaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgca |
33959445 |
T |
|
| Q |
257 |
ggagaaagtgcatgcaaatgttcttctgagaatgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgcttt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| || |||| |
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|
| T |
33959446 |
ggagaaagtgcatgcaaatgttcttctgagaatgattc------ctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacacttt |
33959539 |
T |
|
| Q |
357 |
ataaggccagagaaattcttgagcttctcatccatgaaaat |
397 |
Q |
| |
|
||||| | |||||||||||||||||||||| ||| |||||| |
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|
| T |
33959540 |
ataagccaagagaaattcttgagcttctcaaccacgaaaat |
33959580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 33973227 - 33973582
Alignment:
| Q |
18 |
tcaaattcatgagtagcgctac---acacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagc |
114 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||| || ||| ||| |
|
|
| T |
33973227 |
tcaaattcatgagtagcgccacgacacatattattacccttacaacaagatttaa------tgatgtcttgaacaaaatatctgaaatagttgaaacagc |
33973320 |
T |
|
| Q |
115 |
acaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcac |
214 |
Q |
| |
|
|| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
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|
| T |
33973321 |
acgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggatcaa |
33973420 |
T |
|
| Q |
215 |
cccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatgattcctatggctatgttgttgagg |
314 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||| ||| |||||||| | |
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|
| T |
33973421 |
cccagagaagaaataaatagtttgataga---------------agaaagtgcatgcaaatcttcttttgagaatgattc------ctacgttgttgatg |
33973499 |
T |
|
| Q |
315 |
agaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaat |
397 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
33973500 |
agaaccaatctcttattgtaaatgatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaaccacgaaaat |
33973582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 33959247 - 33959349
Alignment:
| Q |
19 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagcacaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
33959247 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaatacttcaaaaagcacga |
33959346 |
T |
|
| Q |
119 |
aag |
121 |
Q |
| |
|
||| |
|
|
| T |
33959347 |
aag |
33959349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 455 - 531
Target Start/End: Original strand, 33973577 - 33973653
Alignment:
| Q |
455 |
gaaaatccaaaattcactgttgggttggatatagcatttagcaagttgaaaatggagcttctgaggggtggtagctc |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33973577 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttctgaggggtggtagctc |
33973653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 301 - 513
Target Start/End: Original strand, 10341 - 10556
Alignment:
| Q |
301 |
ctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaatttt |
400 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||| ||||| | | | ||||||||| |
|
|
| T |
10341 |
ctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttcttaacaaggaaaatttt |
10440 |
T |
|
| Q |
401 |
gtacacaaattcaatgaagatggacaac---tttttaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatagcatttagca |
497 |
Q |
| |
|
| ||| ||||| |||||| |||||| || | || ||| ||||||| | |||||| ||||||||| |||||| ||||||| | |||||| ||||||||| |
|
|
| T |
10441 |
gaacagaaatttaatgaaaatggaccaccaatattcaagggtccttttggtgttccagaaaatccagaattcattgttgggattgatataccatttagca |
10540 |
T |
|
| Q |
498 |
agttgaaaatggagct |
513 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10541 |
agttgaaaatggagct |
10556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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