View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_15 (Length: 544)
Name: NF20618_low_15
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 217 - 526
Target Start/End: Complemental strand, 36908686 - 36908403
Alignment:
| Q |
217 |
gtatcaattcggactgtcacttacattgttgccaattttttagtaggaccctcgcacccaaatagccacagatacagattccttcatcaaccaaaccaaa |
316 |
Q |
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| T |
36908686 |
gtatcaattcggactgtcacttacattgttgccaattttttagtaggaccctcgcacccaaatagccacagatacagattccttcatcaaccaaaccaaa |
36908587 |
T |
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| Q |
317 |
caatctttaactttttcttgcattgcattcctacctctctcaactcacaattttggttgtataaaacttctaatacaatattatccatttttgttacatc |
416 |
Q |
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| T |
36908586 |
caatctttaactttttcttgcattgcattcctacctctctcaactcacaattttggttgta------------------attatccatttttgttacatc |
36908505 |
T |
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| Q |
417 |
ccattactctctgcattactgcaaaattgtctttagaatccttttaaattttcataattatttgatctattgttatattttcctatactatcatatgtgg |
516 |
Q |
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| T |
36908504 |
ccattactct--------ctgcaaaattgtctttagaatccttttaaatattcataattatttgatctattgttatattttcctatactatcatatgtgg |
36908413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 36908904 - 36908717
Alignment:
| Q |
13 |
gagatgacagcagtggaagaaattgtaagataggaaaacgttaaaagtagagaatctgaaacgtcaaatcagttaagtaggtggggtgcatgtgtgactt |
112 |
Q |
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| T |
36908904 |
gagatgacagcagtggaagaaattgtaagataggaaaacgttaaaagtagagaatctgaaacgtcaaatcagttaagtaggtggggtgcatgtgtgactt |
36908805 |
T |
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| Q |
113 |
ggatcttgttggaaacaaagaaagatagctagatagatgtgtgacttgactttaatctttgtttgcagaaaacaataataaatgaatg |
200 |
Q |
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| T |
36908804 |
ggatcttgttggaaacaaagaaagatagctagatagatgtgtgacttgactttaatctttgtttgcagaaaacaataataaatgaatg |
36908717 |
T |
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