View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_17 (Length: 540)

Name: NF20618_low_17
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_low_17
NF20618_low_17
[»] chr7 (3 HSPs)
chr7 (48-501)||(6080211-6080662)
chr7 (312-370)||(35011869-35011927)
chr7 (449-487)||(18371817-18371855)
[»] chr4 (3 HSPs)
chr4 (454-499)||(56338226-56338271)
chr4 (454-490)||(2274396-2274432)
chr4 (452-488)||(11384487-11384523)
[»] chr8 (2 HSPs)
chr8 (443-496)||(6133509-6133562)
chr8 (452-488)||(42127655-42127691)
[»] chr2 (2 HSPs)
chr2 (443-496)||(26379647-26379700)
chr2 (452-488)||(28239640-28239676)
[»] scaffold0912 (1 HSPs)
scaffold0912 (443-500)||(1854-1908)


Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 48 - 501
Target Start/End: Complemental strand, 6080662 - 6080211
Alignment:
Q  48 attatgaagatttgcagagtgaaaaacaaaggaacaatgatgactcacattaaggcatttaatcaaacaggtttagtgtacgcagcgaaatagggaaata 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080662 attatgaagatttgcagagtgaaaaacaaaggaacaatgatgactaacattaaggcatttaatcaaacaggtttagtgtacgcagcgaaatagggaaata 6080563  T
Q  148 ttgagttcaaattcctctgatttcaaaaaagtagaacaaattcaaaacgaaaagggttacttagattatgcagattagaatattgataaaccctttatca 247  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080562 ttgagttcaaattcctctgatttcaaaa--gtagaacaaattcaaaacgaaaagggttacttagattatgcagattagaatattgataaaccctttatca 6080465  T
Q  248 ctatttacttggcgtcgcaaatgaacataatacgattagtttaagggattggatttgggaaaatttgttgacaataagatgcttaagaataaaagccgta 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080464 ctatttacttggcgtcgcaaatgaacataatacgattagtttaagggattggatttgggaaaatttgttgacaataagatgcttaagaataaaagccgta 6080365  T
Q  348 cctcaacggtgatcggagaagcttggtggcggtaagggcgacggggctaagcgttggaaacactatcacacagttcacaacatgtgcatttcttttttaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080364 cctcaacggtgatcggagaagcttggtggcggtaagggcgacggggctaagcgttggaaacactatcacacagttcacaacatgtgcatttcttttttaa 6080265  T
Q  448 cttttgggtttaaatttgtgttaattttgtatgatgatgaagataatattttga 501  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6080264 cttttgggtttaaatttgtgttaattttgtatcatgatgaagataatattttga 6080211  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 35011869 - 35011927
Alignment:
Q  312 ttgttgacaataagatgcttaagaataaaagccgtacctcaacggtgatcggagaagct 370  Q
    ||||||| ||| ||||||||| || |||||||||||||||||||||| |||||||||||    
T  35011869 ttgttgagaatgagatgcttaggattaaaagccgtacctcaacggtggtcggagaagct 35011927  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 18371855 - 18371817
Alignment:
Q  449 ttttgggtttaaatttgtgttaattttgtatgatgatga 487  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  18371855 ttttgggtttaaatttgtgttaatgttggatgatgatga 18371817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 56338226 - 56338271
Alignment:
Q  454 ggtttaaatttgtgttaattttgtatgatgatgaagataatatttt 499  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  56338226 ggtttaaatttgtgttaattttatatgatgatgaagataatatttt 56338271  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 2274432 - 2274396
Alignment:
Q  454 ggtttaaatttgtgttaattttgtatgatgatgaaga 490  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2274432 ggtttaaatttgtgttaattttggatgatgatgaaga 2274396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 488
Target Start/End: Complemental strand, 11384523 - 11384487
Alignment:
Q  452 tgggtttaaatttgtgttaattttgtatgatgatgaa 488  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  11384523 tgggtttaaatttgttttaattttggatgatgatgaa 11384487  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 6133509 - 6133562
Alignment:
Q  443 tttaacttttgggtttaaatttgtgttaattttgtatgatgatgaagataatat 496  Q
    ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  6133509 tttaagttttgggtttatatttgagttaattttggatgatgatgaagataatat 6133562  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 488
Target Start/End: Complemental strand, 42127691 - 42127655
Alignment:
Q  452 tgggtttaaatttgtgttaattttgtatgatgatgaa 488  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  42127691 tgggtttaaatttgttttaattttggatgatgatgaa 42127655  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 26379700 - 26379647
Alignment:
Q  443 tttaacttttgggtttaaatttgtgttaattttgtatgatgatgaagataatat 496  Q
    ||||| ||||||||||| | ||| |||||||||| |||||||||||||||||||    
T  26379700 tttaagttttgggtttatacttgagttaattttggatgatgatgaagataatat 26379647  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 488
Target Start/End: Complemental strand, 28239676 - 28239640
Alignment:
Q  452 tgggtttaaatttgtgttaattttgtatgatgatgaa 488  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  28239676 tgggtttaaatttgttttaattttggatgatgatgaa 28239640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 500
Target Start/End: Complemental strand, 1908 - 1854
Alignment:
Q  443 tttaacttttgggtttaaatttgtgttaattttgtatgatgatgaagataatattttg 500  Q
    ||||| ||||| ||||||||||||||||||||||   ||||||||||| |||||||||    
T  1908 tttaagttttgagtttaaatttgtgttaattttg---gatgatgaagaaaatattttg 1854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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