View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_19 (Length: 528)
Name: NF20618_low_19
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 48883632 - 48883878
Alignment:
| Q |
13 |
tgagtagaattaaaattaaacaatgctctaaagtggagaatgag----tgatcaccatcagtaagtgtcaagacctgagtggatgacactaaaaaggttg |
108 |
Q |
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| T |
48883632 |
tgagtagaattaaaattaaacaatgctccaaagtggagaatgagtgagtgatcactatcagtaagtgtcaagacctgagtggatgacactaaaaaggttg |
48883731 |
T |
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| Q |
109 |
ggggaactaattctttgcttcataattatcaataagctaagacctttttagagcgtgtggtccactagttggtgaatgaattatatagaacaatattgtg |
208 |
Q |
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| T |
48883732 |
ggggaactaattctttgcttcataattatcaataagctaagatctttttagagcttgtggtccactagttggtgaatgaattatatagaacaatattgtg |
48883831 |
T |
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| Q |
209 |
atcaataccataggtattttataaaaatattagtatgatcattattt |
255 |
Q |
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| T |
48883832 |
atcaataccataggtattttataaaaatattagtatgatcattattt |
48883878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 308 - 489
Target Start/End: Original strand, 48883874 - 48884056
Alignment:
| Q |
308 |
tatttggaacatcacttcttttgaagaaagtacggaacctgggacatgagtttgaggaaattacagtttggaacaaccattatagttgtccaaaaatgtg |
407 |
Q |
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| T |
48883874 |
tatttgcaacatcacttcttttgaagaaagtacggaacttgggacatgagtttgaggaaattacagtttggaacaaccgttatagttgtccaaaaatgtg |
48883973 |
T |
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| Q |
408 |
tagcctagaggtttgatacctatggctaacattttcaccatgtcctctaaaaatttagtgacaactagtaa-cgtttgtctat |
489 |
Q |
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| T |
48883974 |
tagcctagaggtttggtacctatggctaacattttcaccatgtcctctaaaaatttagtgacaactagtaatcgtttgtctat |
48884056 |
T |
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