View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_2 (Length: 847)
Name: NF20618_low_2
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 275 - 829
Target Start/End: Original strand, 43380764 - 43381335
Alignment:
| Q |
275 |
acaaaagattcaccgtaacatgcaaatacttttcaaaatttcagttggtgaatattttattttggcttgtgatctagtatcaatcaatctcattccattc |
374 |
Q |
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| T |
43380764 |
acaaaagattcactgtaacatgcaaatacttttcaaaatttcagttagtcaatattttattttgtcttgtgatctagtatcaatcaatctcattccattc |
43380863 |
T |
|
| Q |
375 |
cacatcatgcagatgtgcgattttggttgtcagccatggggatcccctgcagatcttgcaaacaattctgcatgcagctaagaaacataaggaacccact |
474 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43380864 |
cacatcattcagatgtgcgattttggttgtcagccatggggatcccctgcagatcttgcaaacaattcttcatgcagctaagaaacataaggaacccact |
43380963 |
T |
|
| Q |
475 |
tctgatgacttagcttcaatattagaggcagttcaggtggcgccaatcttgtccaagcatcgccaatatgctctgaatactggagagctcaggagagtca |
574 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43380964 |
tctaatgacttagcttcaatattagaggcagttcaggtggcgccaatcttgtccaagcatcgccaatatgctctgaatactggagagctcaggagagtca |
43381063 |
T |
|
| Q |
575 |
tttgagatttgacgattgaggtctagcattaatgcagctaactgttttggttggattttaatccccttttttccattgtttagtttattatcatattcaa |
674 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43381064 |
tttgagatttcacgtttgaggtctagcattaatgcagctaactgttttggttggattttaatccccttttttccattgtttagtttattatcatattcaa |
43381163 |
T |
|
| Q |
675 |
aactctttggagtatttatcaaatatttt-----ctttatgaagatgatg------------attagtttgcagtttataatacatgatgattatatatt |
757 |
Q |
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| T |
43381164 |
aactctttggagtatttatcaaatattttcttttctttatgaagatgatgattcttcaggaaattactttgcagtttataatacatgatgattatatatt |
43381263 |
T |
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| Q |
758 |
gaatcatttggactggattttgtgtgaaagaggatgttccatttattttccaattgaatattttagtatcta |
829 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43381264 |
gactcatttggactggattttgtgtgaaagaggatgttccatttattttccaattgaatattttagtatcta |
43381335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 44 - 278
Target Start/End: Original strand, 43380488 - 43380718
Alignment:
| Q |
44 |
agtttgttaaactcattttctcttttcannnnnnnatcaacaaacagtatgatcatatttgggaaatagatgagaaagatcctctttttgggccagaagg |
143 |
Q |
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| T |
43380488 |
agtttgttaaactcattttctcttttcatttttttatcaata----gtatgatcatatttgggaaatagatgagaaagatcctcttgttgggccagaagg |
43380583 |
T |
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| Q |
144 |
aggggaaagtgttaaggatgttgccagtagacttgcaaaaacaatggccattttcgaacaagaatttgaagggtacccatttctgcctttaaatatcatt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43380584 |
aggggaaagtgttaaggatgttgccagtagacttgcaaaaacaatggccattatcgaacaagaatttgaagggtacccatttctgcctttaaatatcatt |
43380683 |
T |
|
| Q |
244 |
tgaaattcttctagtatgtgtcttttttatcacaa |
278 |
Q |
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| T |
43380684 |
tgaaattcttctagtatgtgtcttttttatcacaa |
43380718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 677 - 829
Target Start/End: Original strand, 25870744 - 25870908
Alignment:
| Q |
677 |
ctctttggagtatttatcaaatattttctttatgaagatgatgatt------------agtttgcagtttataatacatgatgattatatattgaatcat |
764 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870744 |
ctctttggagtatttatcaaatattttctttatgaagatgatgattcttcaggaaattagtttgcagtttataatacatgatgattatatattgaatcat |
25870843 |
T |
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| Q |
765 |
ttggactggattttgtgtgaaagaggatgttccatttattttccaattgaatattttagtatcta |
829 |
Q |
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| T |
25870844 |
ttggactggattttgtgtgaaagaggaagttccatttattttccaattgaatattttagtatcta |
25870908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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