View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_21 (Length: 526)
Name: NF20618_low_21
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_21 |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 268 - 526
Target Start/End: Original strand, 787350 - 787608
Alignment:
| Q |
268 |
cccaattgaaatccccaattctaaaaatccaaactttgatacattcatcacatatctatatattacaatatttggcacaccaattttaaaatctaccttt |
367 |
Q |
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| T |
787350 |
cccaattgaaatccccaattctaaaaatccaaactttgatacattcatcacatatctatatattacaatatttggcacaccaattttaaaatgtaccttt |
787449 |
T |
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| Q |
368 |
acaaaagaaacaacaacccaaaattggaggaaattaacaaatgagagtgagagattacaatgaaggagaaggatggaacaacgaacacggtgaggaaagt |
467 |
Q |
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| T |
787450 |
acaaaagaaataacaactcaaaattggaggaaattaacaaatgagagtgagagattacaatgaaggagaaggaaggaacaacgaagacggtgaggaaagt |
787549 |
T |
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| Q |
468 |
acaaacaaaacatgttagttgttaaagcactaacacaggggaaagcggttctcttaaat |
526 |
Q |
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| T |
787550 |
acaaacaaaacatgttagttgttaaagcactaacacaggggaaagcggttctcttaaat |
787608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 787114 - 787251
Alignment:
| Q |
20 |
tctcaatgcattctaaca---attctaatttctcatacataggacaaacgttcaaaatttgcatcatcaatcaaaatgaatagaacacaataatcaccca |
116 |
Q |
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| T |
787114 |
tctcaatgcattctaacaacaattctaatttctcatacataggacaaacgctcaaaatttgcatcatcaatcaaaatgaatagaacacaataatcaccca |
787213 |
T |
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| Q |
117 |
caccaccaacaacaaaaataaaatgacccttttcaaag |
154 |
Q |
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| T |
787214 |
caccaccaacaacaaatataaaatgacccttttcaaag |
787251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 45576288 - 45576381
Alignment:
| Q |
20 |
tctcaatgcattcta---acaattctaatttctcatacataggacaaacgttcaaaatttgcatcatcaatcaaaatgaatagaacacaataat |
110 |
Q |
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| T |
45576288 |
tctcaatgcattctaccaacaattctaatttctcatacataggacaaaccctcaaaatttgcatcatcaatcaaaatgattagaacacaataat |
45576381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 386 - 526
Target Start/End: Original strand, 42078124 - 42078263
Alignment:
| Q |
386 |
caaaattggaggaaattaacaaatgagagtgagagattacaatgaaggagaaggatggaacaacgaacacggtgaggaaagtacaaacaaaacatgttag |
485 |
Q |
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| T |
42078124 |
caaaattggaggaaattcacaaatgagagtgagagattacgatgaaggagaaggaaggaacaacaaagtggatgaaaaaagtacaaataaaacatgttag |
42078223 |
T |
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| Q |
486 |
ttgttaaagcactaacacaggggaaagcggttctcttaaat |
526 |
Q |
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| T |
42078224 |
ttgttaaagcacgaa-acaagggagagcggttctcttaaat |
42078263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 42078067 - 42078113
Alignment:
| Q |
280 |
ccccaattctaaaaatccaaactttgatacattcatcacatatctat |
326 |
Q |
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| T |
42078067 |
ccccaattctaaaaatccaaactttaatacattcatcacagatctat |
42078113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 31632736 - 31632831
Alignment:
| Q |
20 |
tctcaatgcattcta---acaattctaatttctcatacataggacaaacgttcaaaatttgcatcatcaatcaaaatgaatagaacacaataatca |
112 |
Q |
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| T |
31632736 |
tctcaatgcattctaccaacaattctaatttctcatacataggacaaacccttaaaatttgcatcatcaatcaaaatgattagaacacaataatca |
31632831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 21082712 - 21082641
Alignment:
| Q |
350 |
attttaaaatctacctttacaaaagaaacaacaacccaaaattggaggaaattaacaaatgagagtgagaga |
421 |
Q |
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| T |
21082712 |
atttcaaaatctacctttgaaaacgaaataacaatccaaaattggaggaaattcacaaatgagagagagaga |
21082641 |
T |
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